Ontology highlight
ABSTRACT:
SUBMITTER: Schoneberg J
PROVIDER: S-EPMC3770580 | biostudies-literature | 2013
REPOSITORIES: biostudies-literature
PloS one 20130911 9
We introduce the software package ReaDDy for simulation of detailed spatiotemporal mechanisms of dynamical processes in the cell, based on reaction-diffusion dynamics with particle resolution. In contrast to other particle-based reaction kinetics programs, ReaDDy supports particle interaction potentials. This permits effects such as space exclusion, molecular crowding and aggregation to be modeled. The biomolecules simulated can be represented as a sphere, or as a more complex geometry such as a ...[more]