Unknown

Dataset Information

0

Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load.


ABSTRACT: Steady-state metabolite concentrations in a microorganism typically span several orders of magnitude. The underlying principles governing these concentrations remain poorly understood. Here, we hypothesize that observed variation can be explained in terms of a compromise between factors that favor minimizing metabolite pool sizes (e.g. limited solvent capacity) and the need to effectively utilize existing enzymes. The latter requires adequate thermodynamic driving force in metabolic reactions so that forward flux substantially exceeds reverse flux. To test this hypothesis, we developed a method, metabolic tug-of-war (mTOW), which computes steady-state metabolite concentrations in microorganisms on a genome-scale. mTOW is shown to explain up to 55% of the observed variation in measured metabolite concentrations in E. coli and C. acetobutylicum across various growth media. Our approach, based strictly on first thermodynamic principles, is the first method that successfully predicts high-throughput metabolite concentration data in bacteria across conditions.

SUBMITTER: Tepper N 

PROVIDER: S-EPMC3784570 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

altmetric image

Publications

Steady-state metabolite concentrations reflect a balance between maximizing enzyme efficiency and minimizing total metabolite load.

Tepper Naama N   Noor Elad E   Amador-Noguez Daniel D   Haraldsdóttir Hulda S HS   Milo Ron R   Rabinowitz Josh J   Liebermeister Wolfram W   Shlomi Tomer T  

PloS one 20130926 9


Steady-state metabolite concentrations in a microorganism typically span several orders of magnitude. The underlying principles governing these concentrations remain poorly understood. Here, we hypothesize that observed variation can be explained in terms of a compromise between factors that favor minimizing metabolite pool sizes (e.g. limited solvent capacity) and the need to effectively utilize existing enzymes. The latter requires adequate thermodynamic driving force in metabolic reactions so  ...[more]

Similar Datasets

| S-EPMC7316378 | biostudies-literature
| S-EPMC3287502 | biostudies-literature
| S-EPMC6648237 | biostudies-literature
| S-EPMC4432691 | biostudies-literature
| S-EPMC1207621 | biostudies-other
| S-EPMC3096684 | biostudies-literature
| S-EPMC10943787 | biostudies-literature
| S-EPMC1526435 | biostudies-literature
| S-EPMC1903363 | biostudies-literature
| S-EPMC6275107 | biostudies-literature