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Complete genome analysis of a rare human G3P[9] rotavirus posing as an AU-1 like strain.

ABSTRACT: BACKGROUND:We performed phylogenetic and sequence analysis by Basic Local Alignment Search Tool (BLAST) of a complete Human Rotavirus (HRV) genome isolated from a hospitalized child with acute gastroenteritis in Thailand. FINDINGS:The results indicated an uncommon strain characterized by multiple re-assortments in the VP3, VP4, VP6, NSP1, NSP4 and NSP5 genes. The uncommon strain is genotype G3-P[9]-I3-R3-C3-M3-A3-N3-T3-E3-H6, which displays aspects of the AU-1, FRV-1 and corresponds to the feline/canine prototype G3P[9] strain. CONCLUSIONS:The results suggested that nearly all the eleven gene segments of G3P[9] RVA strain CU365 might have originated from feline/canine RVAs (Rotavirus A).

SUBMITTER: Theamboonlers A

PROVIDER: S-EPMC3824699 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

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Complete genome analysis of a rare human G3P[9] rotavirus posing as an AU-1 like strain.

Theamboonlers Apiradee A Maiklang Ornwalan O Thongmee Thanunrat T Chieochansin Thaweesak T Vuthitanachot Viboonsuk V Poovorawan Yong Y

SpringerPlus 20131026

<h4>Background</h4>We performed phylogenetic and sequence analysis by Basic Local Alignment Search Tool (BLAST) of a complete Human Rotavirus (HRV) genome isolated from a hospitalized child with acute gastroenteritis in Thailand.<h4>Findings</h4>The results indicated an uncommon strain characterized by multiple re-assortments in the VP3, VP4, VP6, NSP1, NSP4 and NSP5 genes. The uncommon strain is genotype G3-P[9]-I3-R3-C3-M3-A3-N3-T3-E3-H6, which displays aspects of the AU-1, FRV-1 and correspon ...[more]

PMID: 24255863

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