Sequencing of the IL6 gene in a case-control study of cerebral palsy in children.
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ABSTRACT: BACKGROUND: Cerebral palsy (CP) is a group of nonprogressive disorders of movement and posture caused by abnormal development of, or damage to, motor control centers of the brain. A single nucleotide polymorphism (SNP), rs1800795, in the promoter region of the interleukin-6 (IL6) gene has been implicated in the pathogenesis of CP by mediating IL-6 protein levels in amniotic fluid and cord plasma and within brain lesions. This SNP has been associated with other neurological, vascular, and malignant processes as well, often as part of a haplotype block. METHODS: To refine the regional genetic association with CP, we sequenced (Sanger) the IL6 gene and part of the promoter region in 250 infants with CP and 305 controls. RESULTS: We identified a haplotype of 7 SNPs that includes rs1800795. In a recessive model of inheritance, the variant haplotype conferred greater risk (OR?=?4.3, CI?=?[2.0-10.1], p?=?0.00007) than did the lone variant at rs1800795 (OR?=?2.5, CI?=?[1.4-4.6], p?=?0.002). The risk haplotype contains one SNP (rs2069845, CI?=?[1.2-4.3], OR?=?2.3, p?=?0.009) that disrupts a methylation site. CONCLUSIONS: The risk haplotype identified in this study overlaps with previously identified haplotypes that include additional promoter SNPs. A risk haplotype at the IL6 gene likely confers risk to CP, and perhaps other diseases, via a multi-factorial mechanism.
SUBMITTER: Khankhanian P
PROVIDER: S-EPMC3881497 | biostudies-literature | 2013
REPOSITORIES: biostudies-literature
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