Ontology highlight
ABSTRACT:
SUBMITTER: Hwang H
PROVIDER: S-EPMC3936321 | biostudies-literature | 2010 Nov
REPOSITORIES: biostudies-literature
Hwang Howook H Vreven Thom T Pierce Brian G BG Hung Jui-Hung JH Weng Zhiping Z
Proteins 20101101 15
We report the performance of the ZDOCK and ZRANK algorithms in CAPRI rounds 13-19 and introduce a novel measure atom contact frequency (ACF). To compute ACF, we identify the residues that most often make contact with the binding partner in the complete set of ZDOCK predictions for each target. We used ACF to predict the interface of the proteins, which, in combination with the biological data available in the literature, is a valuable addition to our docking pipeline. Furthermore, we incorporate ...[more]