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Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort).


ABSTRACT: OBJECTIVES:This study sought to identify loci for coronary artery calcification (CAC) in patients with chronic kidney disease (CKD). BACKGROUND:CKD is associated with increased CAC and subsequent coronary heart disease (CHD), but the mechanisms remain poorly defined. Genetic studies of CAC in CKD may provide a useful strategy for identifying novel pathways in CHD. METHODS:We performed a candidate gene study (?2,100 genes; ?50,000 single nucleotide polymorphisms [SNPs]) of CAC within the CRIC (Chronic Renal Insufficiency Cohort) study (N = 1,509; 57% European, 43% African ancestry). SNPs with preliminary evidence of association with CAC in CRIC were examined for association with CAC in the PennCAC (Penn Coronary Artery Calcification) (N = 2,560) and AFCS (Amish Family Calcification Study) (N = 784) samples. SNPs with suggestive replication were further analyzed for association with myocardial infarction (MI) in the PROMIS (Pakistan Risk of Myocardial Infarction Study) (N = 14,885). RESULTS:Of 268 SNPs reaching p < 5 × 10(-4) for CAC in CRIC, 28 SNPs in 23 loci had nominal support (p < 0.05 and in same direction) for CAC in PennCAC or AFCS. Besides chr9p21 and COL4A1, known loci for CHD, these included SNPs having reported genome-wide association study association with hypertension (e.g., ATP2B1). In PROMIS, 4 of the 23 suggestive CAC loci (chr9p21, COL4A1, ATP2B1, and ABCA4) had significant associations with MI, consistent with their direction of effect on CAC. CONCLUSIONS:We identified several loci associated with CAC in CKD that also relate to MI in a general population sample. CKD imparts a high risk of CHD and may provide a useful setting for discovery of novel CHD genes and pathways.

SUBMITTER: Ferguson JF 

PROVIDER: S-EPMC3953823 | biostudies-literature | 2013 Aug

REPOSITORIES: biostudies-literature

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Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort).

Ferguson Jane F JF   Matthews Gregory J GJ   Townsend Raymond R RR   Raj Dominic S DS   Kanetsky Peter A PA   Budoff Matthew M   Fischer Michael J MJ   Rosas Sylvia E SE   Kanthety Radhika R   Rahman Mahboob M   Master Stephen R SR   Qasim Atif A   Li Mingyao M   Mehta Nehal N NN   Shen Haiqing H   Mitchell Braxton D BD   O'Connell Jeffrey R JR   Shuldiner Alan R AR   Ho Weang Kee WK   Young Robin R   Rasheed Asif A   Danesh John J   He Jiang J   Kusek John W JW   Ojo Akinlolu O AO   Flack John J   Go Alan S AS   Gadegbeku Crystal A CA   Wright Jackson T JT   Saleheen Danish D   Feldman Harold I HI   Rader Daniel J DJ   Foulkes Andrea S AS   Reilly Muredach P MP  

Journal of the American College of Cardiology 20130530 9


<h4>Objectives</h4>This study sought to identify loci for coronary artery calcification (CAC) in patients with chronic kidney disease (CKD).<h4>Background</h4>CKD is associated with increased CAC and subsequent coronary heart disease (CHD), but the mechanisms remain poorly defined. Genetic studies of CAC in CKD may provide a useful strategy for identifying novel pathways in CHD.<h4>Methods</h4>We performed a candidate gene study (∼2,100 genes; ∼50,000 single nucleotide polymorphisms [SNPs]) of C  ...[more]

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