Dataset Information

The looks of an odour--visualising neural odour response patterns in real time.

ABSTRACT:

Background

Calcium imaging in insects reveals the neural response to odours, both at the receptor level on the antenna and in the antennal lobe, the first stage of olfactory information processing in the brain. Changes of intracellular calcium concentration in response to odour presentations can be observed by employing calcium-sensitive, fluorescent dyes. The response pattern across all recorded units is characteristic for the odour.

Method

Previously, extraction of odour response patterns from calcium imaging movies was performed offline, after the experiment. We developed software to extract and to visualise odour response patterns in real time. An adaptive algorithm in combination with an implementation for the graphics processing unit enables fast processing of movie streams. Relying on correlations between pixels in the temporal domain, the calcium imaging movie can be segmented into regions that correspond to the neural units.

Results

We applied our software to calcium imaging data recorded from the antennal lobe of the honeybee Apis mellifera and from the antenna of the fruit fly Drosophila melanogaster. Evaluation on reference data showed results comparable to those obtained by previous offline methods while computation time was significantly lower. Demonstrating practical applicability, we employed the software in a real-time experiment, performing segmentation of glomeruli--the functional units of the honeybee antennal lobe--and visualisation of glomerular activity patterns.

Conclusions

Real-time visualisation of odour response patterns expands the experimental repertoire targeted at understanding information processing in the honeybee antennal lobe. In interactive experiments, glomeruli can be selected for manipulation based on their present or past activity, or based on their anatomical position. Apart from supporting neurobiology, the software allows for utilising the insect antenna as a chemosensor, e.g. to detect or to classify odours.

SUBMITTER: Strauch M

PROVIDER: S-EPMC3980292 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

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Publications

The looks of an odour--visualising neural odour response patterns in real time.

Strauch Martin M Müthing Clemens C Broeg Marc P MP Szyszka Paul P Münch Daniel D Laudes Thomas T Deussen Oliver O Galizia Cosmas Giovanni CG Merhof Dorit D

BMC bioinformatics 20131112

<h4>Background</h4>Calcium imaging in insects reveals the neural response to odours, both at the receptor level on the antenna and in the antennal lobe, the first stage of olfactory information processing in the brain. Changes of intracellular calcium concentration in response to odour presentations can be observed by employing calcium-sensitive, fluorescent dyes. The response pattern across all recorded units is characteristic for the odour.<h4>Method</h4>Previously, extraction of odour respons ...[more]

PMID: 24564474

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Project description:Understanding the real-time dynamical mechanisms of neural systems remains a significant issue, preventing the development of efficient neural technology and user trust. This is because the mechanisms, involving various neural spatial-temporal ingredients [i.e., neural structure (NS), neural dynamics (ND), neural plasticity (NP), and neural memory (NM)], are too complex to interpret and analyze altogether. While advanced tools have been developed using explainable artificial intelligence (XAI), node-link diagram, topography map, and other visualization techniques, they still fail to monitor and visualize all of these neural ingredients online. Accordingly, we propose here for the first time "NeuroVis," real-time neural spatial-temporal information measurement and visualization, as a method/tool to measure temporal neural activities and their propagation throughout the network. By using this neural information along with the connection strength and plasticity, NeuroVis can visualize the NS, ND, NM, and NP via i) spatial 2D position and connection, ii) temporal color gradient, iii) connection thickness, and iv) temporal luminous intensity and change of connection thickness, respectively. This study presents three use cases of NeuroVis to evaluate its performance: i) function approximation using a modular neural network with recurrent and feedforward topologies together with supervised learning, ii) robot locomotion control and learning using the same modular network with reinforcement learning, and iii) robot locomotion control and adaptation using another larger-scale adaptive modular neural network. The use cases demonstrate how NeuroVis tracks and analyzes all neural ingredients of various (embodied) neural systems in real-time under the robot operating system (ROS) framework. To this end, it will offer the opportunity to better understand embodied dynamic neural information processes, boost efficient neural technology development, and enhance user trust.

Dataset Information

The looks of an odour--visualising neural odour response patterns in real time.

Background

Method

Results

Conclusions

Publications

The looks of an odour--visualising neural odour response patterns in real time.

Similar Datasets

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