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Template-based structure modeling of protein-protein interactions.


ABSTRACT: The structure of protein-protein complexes can be constructed by using the known structure of other protein complexes as a template. The complex structure templates are generally detected either by homology-based sequence alignments or, given the structure of monomer components, by structure-based comparisons. Critical improvements have been made in recent years by utilizing interface recognition and by recombining monomer and complex template libraries. Encouraging progress has also been witnessed in genome-wide applications of template-based modeling, with modeling accuracy comparable to high-throughput experimental data. Nevertheless, bottlenecks exist due to the incompleteness of the protein-protein complex structure library and the lack of methods for distant homologous template identification and full-length complex structure refinement.

SUBMITTER: Szilagyi A 

PROVIDER: S-EPMC3984454 | biostudies-literature | 2014 Feb

REPOSITORIES: biostudies-literature

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Template-based structure modeling of protein-protein interactions.

Szilagyi Andras A   Zhang Yang Y  

Current opinion in structural biology 20131211


The structure of protein-protein complexes can be constructed by using the known structure of other protein complexes as a template. The complex structure templates are generally detected either by homology-based sequence alignments or, given the structure of monomer components, by structure-based comparisons. Critical improvements have been made in recent years by utilizing interface recognition and by recombining monomer and complex template libraries. Encouraging progress has also been witnes  ...[more]

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