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Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

ABSTRACT: The chicken has long served as an important model organism in many fields, and continues to aid our understanding of animal development. Functional genomics studies aimed at probing the mechanisms that regulate development require high-quality genomes and transcript annotations. The quality of these resources has improved dramatically over the last several years, but many isoforms and genes have yet to be identified. We hope to contribute to the process of improving these resources with the data presented here: a set of long cDNA sequencing reads, and a curated set of new genes and transcript isoforms not currently represented in the most up-to-date genome annotation currently available to the community of researchers who rely on the chicken genome.

SUBMITTER: Thomas S

PROVIDER: S-EPMC3988055 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature

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Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

Thomas Sean S Underwood Jason G JG Tseng Elizabeth E Holloway Alisha K AK

PloS one 20140415 4

The chicken has long served as an important model organism in many fields, and continues to aid our understanding of animal development. Functional genomics studies aimed at probing the mechanisms that regulate development require high-quality genomes and transcript annotations. The quality of these resources has improved dramatically over the last several years, but many isoforms and genes have yet to be identified. We hope to contribute to the process of improving these resources with the data ...[more]

PMID: 24736250

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