PanGP: a tool for quickly analyzing bacterial pan-genome profile.
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ABSTRACT:
SUBMITTER: Zhao Y
PROVIDER: S-EPMC3998138 | biostudies-literature | 2014 May
REPOSITORIES: biostudies-literature
Publications
PanGP: a tool for quickly analyzing bacterial pan-genome profile.
Zhao Yongbing Y Jia Xinmiao X Yang Junhui J Ling Yunchao Y Zhang Zhang Z Yu Jun J Wu Jiayan J Xiao Jingfa J
Bioinformatics (Oxford, England) 20140113 9
Pan-genome analyses have shed light on the dynamics and evolution of bacterial genome from the point of population. The explosive growth of bacterial genome sequence also brought an extremely big challenge to pan-genome profile analysis. We developed a tool, named PanGP, to complete pan-genome profile analysis for large-scale strains efficiently. PanGP has integrated two sampling algorithms, totally random (TR) and distance guide (DG). The DG algorithm drew sample strain combinations on the basi ...[more]
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