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Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement.

ABSTRACT: One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic symmetry relationships can be exploited to provide additional restraints when refining the working model. However, although globally similar, NCS-related chains often have local differences. To allow for local differences between NCS-related molecules, flexible torsion-based NCS restraints have been introduced, coupled with intelligent rotamer handling for protein chains, and are available in phenix.refine for refinement of models at all resolutions.

SUBMITTER: Headd JJ

PROVIDER: S-EPMC4014122 | biostudies-literature | 2014 May

REPOSITORIES: biostudies-literature

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Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement.

Headd Jeffrey J JJ Echols Nathaniel N Afonine Pavel V PV Moriarty Nigel W NW Gildea Richard J RJ Adams Paul D PD

Acta crystallographica. Section D, Biological crystallography 20140430 Pt 5

One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic symmetry relationships can be exploited to provide additional restraints when refining the working model. However, although globally similar, NCS-related chains often have local differences. To allow fo ...[more]

PMID: 24816103

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