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SCAN: a systems biology approach to pharmacogenomic discovery.


ABSTRACT: Genome-wide association (GWA) studies have identified thousands of genetic variants that contribute to disease and pharmacologic traits. More recently, high-throughput sequencing studies promise to provide a more complete catalog of genetic variants with roles in human phenotypic variation. Yet, characterizing the influence of functional variants on genes, RNAs, proteins, and ultimately disease or pharmacologic traits is a critical challenge for a vast majority of the implicated susceptibility loci. Here we describe SCAN, a bioinformatics resource we have developed to elucidate the functional consequences of genetic variants identified by genome-wide scans. In particular, this public resource implements a systems biology approach to pharmacogenomic discovery.

SUBMITTER: Gamazon ER 

PROVIDER: S-EPMC4032625 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature

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SCAN: a systems biology approach to pharmacogenomic discovery.

Gamazon Eric R ER   Huang R Stephanie RS   Cox Nancy J NJ  

Methods in molecular biology (Clifton, N.J.) 20130101


Genome-wide association (GWA) studies have identified thousands of genetic variants that contribute to disease and pharmacologic traits. More recently, high-throughput sequencing studies promise to provide a more complete catalog of genetic variants with roles in human phenotypic variation. Yet, characterizing the influence of functional variants on genes, RNAs, proteins, and ultimately disease or pharmacologic traits is a critical challenge for a vast majority of the implicated susceptibility l  ...[more]

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