Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Reversible self-assembly of gels through metal-ligand interactions

ABSTRACT: Metal-ligand interactions with various proteins form in vivo metal assemblies. In recent years, metallosupramolecular approaches have been utilized to forge an assortment of fascinating two- and three-dimensional nano-architectures, and macroscopic materials, such as metal-ligand coordination polymeric materials, have promise in artificial systems. However to the best of our knowledge, the self-assembly of macroscopic materials through metal-ligand interactions has yet to be reported. Herein we demonstrate a gel assembly formed via metal-ligand interactions using polyacrylamide modified with Fe-porphyrin and L-histidine moieties. The stress values for the assembly increase as the concentration of Fe-porphyrin or L-histidine in the gels increases. Moreover, agitation of Fe-porphyrin gel, Zn-porphyrin gel, and L-histidine gel in an 80?mM Tris-acetate buffer (pH 9.0) results in selective adhesion of the Fe-porphyrin gel to the L-histidine gel based on the affinities of Fe-porphyrin and Zn-porphyrin with L-histidine.

SUBMITTER: Kobayashi Y

PROVIDER: S-EPMC4071618 | biostudies-literature | 2013 Jan

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Porous supramolecular gels produced by reversible self-gelation of ruthenium-based metal-organic polyhedra.

Project description:Supramolecular gels based on metal-organic polyhedra (MOPs) represent a versatile platform to access processable soft materials with controlled porosity. Herein, we report a self-gelation approach that allows the reversible assembly of a novel Ru-based MOP in the form of colloidal gels. The presence of cationic mixed-valence [Ru2(COO)4]+ paddlewheel units allows for modification of the MOP charge via acid/base treatment, and therefore, its solubility. This feature enables control over supramolecular interactions, making it possible to reversibly force MOP aggregation to form nanoparticles, which further assemble to form a colloidal gel network. The gelation process was thoroughly investigated by time-resolved ζ-potential, pH, and dynamic light scattering measurements. This strategy leads to the evolution of hierarchically porous aerogel from individual MOP molecules without using any additional component. Furthermore, we demonstrate that the simplicity of this method can be exploited for the obtention of MOP-based gels through a one-pot synthetic approach starting from MOP precursors.

| S-EPMC10498683 | biostudies-literature

Understanding the multiscale self-assembly of metal-organic polyhedra towards functionally graded porous gels.

Project description:Spatial heterogeneity and gradients within porous materials are key for controlling their mechanical properties and mass/energy transport, both in biological and synthetic materials. However, it is still challenging to induce such complexity in well-defined microporous materials such as crystalline metal-organic frameworks (MOFs). Here we show a method to generate a continuous gradient of porosity over multiple length scales by taking advantage of the amorphous nature of supramolecular polymers based on metal-organic polyhedra (MOPs). First, we use time-resolved dynamic light scattering (TRDLS) to elucidate the mechanism of hierarchical self-assembly of MOPs into colloidal gels and to understand the relationship between the MOP concentrations and the architecture of the resulting colloidal networks. These features directly impact the viscoelastic response of the gels and their mechanical strength. We then show that gradients of stiffness and porosity can be created within the gel by applying centrifugal force at the point of colloidal aggregation. These results with the creation of asymmetric and graded pore configuration in soft materials could lead to the emergence of advanced properties that are coupled to asymmetric molecule/ion transport as seen in biological systems.

| S-EPMC7012067 | biostudies-literature

Reversible assembly of enantiomeric helical polymers: from fibers to gels.

Project description:A novel class of stereocomplexes is described by the interaction of helically complementary poly(phenylacetylene)s (PPAs) carrying an α-methoxy-α-trifluoromethylphenylacetamide pendant group. The formation of the stereocomplex requires the presence of cis amide bonds on the external crest of the polymer to provide efficient cooperative supramolecular hydrogen bonding between matching enantiomeric helical structures. The interlocking of the chains gives rise to supramolecular fiber-like aggregates that, at higher concentrations, result in gels. The modification of the cis-trans amide conformation at the pendant groups allows the controlled formation and cleavage of the stereocomplex due to a dramatic change between the intermolecular and intramolecular hydrogen bond interactions.

| S-EPMC5433055 | biostudies-literature

Ultrafast Laplace NMR to study metal-ligand interactions in reversible polarisation transfer from parahydrogen.

Project description:Laplace Nuclear Magnetic Resonance (NMR) can determine relaxation parameters and diffusion constants, giving valuable information about molecular structure and dynamics. Information about relaxation times (T1 and T2) and the self-diffusion coefficient (D) can be extracted from exponentially decaying NMR signals by performing a Laplace transform, which is a different approach to traditional NMR involving Fourier transform of a free induction decay. Ultrafast Laplace NMR uses spatial encoding to collect the entire data set in just a single scan which provides orders of magnitude time savings. In this work we use ultrafast Laplace NMR D-T2 correlation sequences to measure key relaxation (T2) and diffusion (D) parameters of methanolic solutions containing pyridine. For the first time we combine this technique with the hyperpolarisation technique Signal Amplification By Reversible Exchange (SABRE), which employs an iridium catalyst to reversibly transfer polarisation from parahydrogen, to boost the 1H NMR signals of pyridine by up to 300-fold. We demonstrate use of ultrafast Laplace NMR to monitor changes in pyridine T2 and D associated with ligation to the iridium SABRE catalyst and kinetic isotope exchange reactions. The combined 1440-fold reduction in experiment time and 300-fold 1H NMR signal enhancement allow the determination of pyridine D coefficients and T2 values at 25 mM concentrations in just 3 seconds using SABRE hyperpolarised ultrafast Laplace NMR.

| S-EPMC8359933 | biostudies-literature

A self-assembly pathway to aligned monodomain gels.

Project description:Aggregates of charged amphiphilic molecules have been found to access a structure at elevated temperature that templates alignment of supramolecular fibrils over macroscopic scales. The thermal pathway leads to a lamellar plaque structure with fibrous texture that breaks on cooling into large arrays of aligned nanoscale fibres and forms a strongly birefringent liquid. By manually dragging this liquid crystal from a pipette onto salty media, it is possible to extend this alignment over centimetres in noodle-shaped viscoelastic strings. Using this approach, the solution of supramolecular filaments can be mixed with cells at physiological temperatures to form monodomain gels of aligned cells and filaments. The nature of the self-assembly process and its biocompatibility would allow formation of cellular wires in situ that have any length and customized peptide compositions for use in biological applications.

| S-EPMC3084632 | biostudies-literature

Isotopic Control over Self-Assembly in Supramolecular Gels.

Project description:It is common to switch between H2O and D2O when examining peptide-based systems, with the assumption being that there are no effects from this change. Here, we describe the effect of changing from H2O to D2O in a number of low-molecular-weight dipeptide-based gels. Gels are formed by decreasing the pH. In most cases, there is little difference in the structures formed at high pH, but this is not universally true. On lowering the pH, the kinetics of gelation are affected and, in some cases, the structures underpinning the gel network are different. Where there are differences in the self-assembled structures, the resulting gel properties are different. We, therefore, show that isotopic control over gel properties is possible.

| S-EPMC7467762 | biostudies-literature

Reversible self-assembly of superstructured networks.

Project description:Soft structures in nature, such as protein assemblies, can organize reversibly into functional and often hierarchical architectures through noncovalent interactions. Molecularly encoding this dynamic capability in synthetic materials has remained an elusive goal. We report on hydrogels of peptide-DNA conjugates and peptides that organize into superstructures of intertwined filaments that disassemble upon the addition of molecules or changes in charge density. Experiments and simulations demonstrate that this response requires large-scale spatial redistribution of molecules directed by strong noncovalent interactions among them. Simulations also suggest that the chemically reversible structures can only occur within a limited range of supramolecular cohesive energies. Storage moduli of the hydrogels change reversibly as superstructures form and disappear, as does the phenotype of neural cells in contact with these materials.

| S-EPMC6420308 | biostudies-literature

Guided and magnetic self-assembly of tunable magnetoceptive gels.

Project description:Self-assembly of components into complex functional patterns at microscale is common in nature, and used increasingly in numerous disciplines such as optoelectronics, microfabrication, sensors, tissue engineering and computation. Here, we describe the use of stable radicals to guide the self-assembly of magnetically tunable gels, which we call 'magnetoceptive' materials at the scale of hundreds of microns to a millimeter, each can be programmed by shape and composition, into heterogeneous complex structures. Using paramagnetism of free radicals as a driving mechanism, complex heterogeneous structures are built in the magnetic field generated by permanent magnets. The overall magnetic signature of final structure is erased via an antioxidant vitamin E, subsequent to guided self-assembly. We demonstrate unique capabilities of radicals and antioxidants in fabrication of soft systems with heterogeneity in material properties, such as porosity, elastic modulus and mass density; then in bottom-up tissue engineering and finally, levitational and selective assembly of microcomponents.

| S-EPMC4153407 | biostudies-literature

Interactions and Self-Assembly of Stable Hydrocarbon Radicals on a Metal Support.

Project description:Stable hydrocarbon radicals are able to withstand ambient conditions. Their combination with a supporting surface is a promising route toward novel functionalities or carbon-based magnetic systems. This will remain elusive until the interplay of radical-radical interactions and interface effects is fundamentally explored. We employ the tip of a low-temperature scanning tunneling microscope as a local probe in combination with density functional theory calculations to investigate with atomic precision the electronic and geometric effects of a weakly interacting metal support on an archetypal hydrocarbon radical model system, i.e., the exceptionally stable spin-1/2 radical α,γ-bisdiphenylene-β-phenylallyl (BDPA). Our study demonstrates the self-assembly of stable and regular one- and two-dimensional radical clusters on the Au(111) surface. Different types of geometric configurations are found to result from the interplay between the highly anisotropic radical-radical interactions and interface effects. We investigate the interaction mechanisms underlying the self-assembly processes and utilize the different configurations as a geometric design parameter to demonstrate energy shifts of up to 0.6 eV of the radicals' frontier molecular orbitals responsible for their electronic, magnetic, and chemical properties.

| S-EPMC3557927 | biostudies-literature

Self-Assembly of a Designed Nucleoprotein Architecture through Multimodal Interactions.

Project description:The co-self-assembly of proteins and nucleic acids (NAs) produces complex biomolecular machines (e.g., ribosomes and telomerases) that represent some of the most daunting targets for biomolecular design. Despite significant advances in protein and DNA or RNA nanotechnology, the construction of artificial nucleoprotein complexes has largely been limited to cases that rely on the NA-mediated spatial organization of protein units, rather than a cooperative interplay between protein- and NA-mediated interactions that typify natural nucleoprotein assemblies. We report here a structurally well-defined synthetic nucleoprotein assembly that forms through the synergy of three types of intermolecular interactions: Watson-Crick base pairing, NA-protein interactions, and protein-metal coordination. The fine thermodynamic balance between these interactions enables the formation of a crystalline architecture under highly specific conditions.

| S-EPMC6276041 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data