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PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.

ABSTRACT: The PRISM web server enables fast and accurate prediction of protein-protein interactions (PPIs). The prediction algorithm is knowledge-based. It combines structural similarity and accounts for evolutionary conservation in the template interfaces. The predicted models are stored in its repository. Given two protein structures, PRISM will provide a structural model of their complex if a matching template interface is available. Users can download the complex structure, retrieve the interface residues and visualize the complex model. The PRISM web server is user friendly, free and open to all users at http://cosbi.ku.edu.tr/prism.

SUBMITTER: Baspinar A

PROVIDER: S-EPMC4086120 | biostudies-literature | 2014 Jul

REPOSITORIES: biostudies-literature

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PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.

Baspinar Alper A Cukuroglu Engin E Nussinov Ruth R Keskin Ozlem O Gursoy Attila A

Nucleic acids research 20140514 Web Server issue

The PRISM web server enables fast and accurate prediction of protein-protein interactions (PPIs). The prediction algorithm is knowledge-based. It combines structural similarity and accounts for evolutionary conservation in the template interfaces. The predicted models are stored in its repository. Given two protein structures, PRISM will provide a structural model of their complex if a matching template interface is available. Users can download the complex structure, retrieve the interface resi ...[more]

PMID: 24829450

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