Dataset Information

MethylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser.

ABSTRACT:

Summary

We present methylC track, an efficient mechanism for visualizing single-base resolution DNA methylation data on a genome browser. The methylC track dynamically integrates the level of methylation, the position and context of the methylated cytosine (i.e. CG, CHG and CHH), strand and confidence level (e.g. read coverage depth in the case of whole-genome bisulfite sequencing data). Investigators can access and integrate these information visually at specific locus or at the genome-wide level on the WashU EpiGenome Browser in the context of other rich epigenomic datasets.

Availability and implementation

The methylC track is part of the WashU EpiGenome Browser, which is open source and freely available at http://epigenomegateway.wustl.edu/browser/. The most up-to-date instructions and tools for preparing methylC track are available at http://epigenomegateway.wustl.edu/+/cmtk.

Contact

twang@genetics.wustl.edu

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Zhou X

PROVIDER: S-EPMC4103599 | biostudies-literature | 2014 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser.

Zhou Xin X Li Daofeng D Lowdon Rebecca F RF Costello Joseph F JF Wang Ting T

Bioinformatics (Oxford, England) 20140410 15

<h4>Summary</h4>We present methylC track, an efficient mechanism for visualizing single-base resolution DNA methylation data on a genome browser. The methylC track dynamically integrates the level of methylation, the position and context of the methylated cytosine (i.e. CG, CHG and CHH), strand and confidence level (e.g. read coverage depth in the case of whole-genome bisulfite sequencing data). Investigators can access and integrate these information visually at specific locus or at the genome- ...[more]

PMID: 24728854

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