Dataset Information

Inherited variation in the PARP1 gene and survival from melanoma.

ABSTRACT: We report the association of an inherited variant located upstream of the poly(adenosine diphosphate-ribose) polymerase 1 (PARP1) gene (rs2249844), with survival in 11 BioGenoMEL melanoma cohorts. The gene encodes a protein involved in a number of cellular processes including single-strand DNA repair. Survival analysis was conducted for each cohort using proportional hazards regression adjusting for factors known to be associated with survival. Survival was measured as overall survival (OS) and, where available, melanoma-specific survival (MSS). Results were combined using random effects meta-analysis. Evidence for a role of the PARP1 protein in melanoma ulceration and survival was investigated by testing gene expression levels taken from formalin-fixed paraffin-embedded tumors. A significant association was seen for inheritance of the rarer variant of PARP1, rs2249844 with OS (hazard ratio (HR) = 1.16 per allele, 95% confidence interval (CI) 1.04-1.28, p = 0.005, eleven cohorts) and MSS (HR = 1.20 per allele, 95% CI 1.01-1.39, p = 0.03, eight cohorts). We report bioinformatic data supportive of a functional effect for rs2249844. Higher levels of PARP1 gene expression in tumors were shown to be associated with tumor ulceration and poorer OS.

SUBMITTER: Davies JR

PROVIDER: S-EPMC4106984 | biostudies-literature | 2014 Oct

REPOSITORIES: biostudies-literature

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Inherited variation in the PARP1 gene and survival from melanoma.

Davies John R JR Jewell Rosalyn R Affleck Paul P Anic Gabriella M GM Randerson-Moor Juliette J Ozola Aija A Egan Kathleen M KM Elliott Faye F García-Casado Zaida Z Hansson Johan J Harland Mark M Höiom Veronica V Jian Guan G Jönsson Göran G Kumar Rajiv R Nagore Eduardo E Wendt Judith J Olsson Håkan H Park Jong Y JY Patel Poulam P Pjanova Dace D Puig Susana S Schadendorf Dirk D Sivaramakrishna Rachakonda P P Snowden Helen H Stratigos Alexander J AJ Bafaloukos Dimitrios D Ogbah Zighereda Z Sucker Antje A Van den Oord Joost J JJ Van Doorn Remco R Walker Christy C Okamoto Ichiro I Wolter Pascal P Barrett Jennifer H JH Timothy Bishop D D Newton-Bishop Julia J

International journal of cancer 20140306 7

We report the association of an inherited variant located upstream of the poly(adenosine diphosphate-ribose) polymerase 1 (PARP1) gene (rs2249844), with survival in 11 BioGenoMEL melanoma cohorts. The gene encodes a protein involved in a number of cellular processes including single-strand DNA repair. Survival analysis was conducted for each cohort using proportional hazards regression adjusting for factors known to be associated with survival. Survival was measured as overall survival (OS) and, ...[more]

PMID: 24535833

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Project description:BACKGROUND:Women have a better melanoma prognosis, and fairer skin/hair colour. The presence of inherited MC1R variants has been associated with a better melanoma prognosis, but its interaction with sex is unknown. OBJECTIVES:To evaluate the relationship between germline MC1R status and survival, and determine any association with sex. METHODS:This was a cohort study including 1341 patients with melanoma from the Melanoma Unit of the Hospital Clinic of Barcelona, between January 1996 and April 2018. We examined known sex-related prognosis factors as they relate to features of melanoma and evaluated the sex-specific role of MC1R in overall and melanoma-specific survival. Hazard ratios (HRs) were calculated using univariate and multivariate Cox logistic regression. RESULTS:Men showed lower overall survival than women (P < 0·001) and the presence of inherited MC1R variants was not associated with better survival in our cohort. However, in women the presence of MC1R variants was associated with better overall survival in the multivariate analysis [HR 0·57, 95% confidence interval (CI) 0·38-0·85; P = 0·006] but not in men [HR 1·26, 95% CI 0·89-1·79; P = 0·185 (P-value for interaction 0·004)]. Analysis performed for melanoma-specific survival showed the same level of significance. CONCLUSIONS:Inherited MC1R variants are associated with improved overall survival in women with melanoma but not in men. Intrinsic sex-dependent features can modify the role of specific genes in melanoma prognosis. We believe that survival studies of patients with melanoma should include analysis by sex and MC1R genotype. What's already known about this topic? Inherited MC1R variants have been associated with a better melanoma prognosis, but their interaction with sex is unknown. What does this study add? MC1R variants are related to better overall survival and melanoma-specific survival in women but not in men. What is the translational message? These differences between the sexes could imply future changes in melanoma follow-up and treatment strategies. This provides a basis for understanding the interaction between sex-related genes and germline variants in cancer.

Dataset Information

Inherited variation in the PARP1 gene and survival from melanoma.

Publications

Inherited variation in the PARP1 gene and survival from melanoma.

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