ESMI: a macrophyte index for assessing the ecological status of lakes.
Ontology highlight
ABSTRACT:
SUBMITTER: Ciecierska H
PROVIDER: S-EPMC4112054 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:This study used an emerging analytical technology (cDNA microarrays) to assess the potential effects of PFC exposure on largemouth bass in TCMA lakes. Microarrays simultaneously measure the expression of thousands of genes in various tissues from organisms exposed to different environmental conditions. From this large data set, biomarkers (i.e., genes that are expressed in response to an exposure to known stressors) and bioindicators (e.g., suites of genes that correspond to changes in organism health) can be simultaneously measured to clarify the relationship between contaminant exposure and organism health. Based on current scientific literature, we hypothesized that gene expression patterns would be altered in fish exposed to PFCs (as compared with fish from reference lakes), and that the magnitude of these changes would correspond to the concentrations of PFCs present throughout TCMA lakes. Patterns of gene expression in largemouth bass observed across the TCMA lakes corresponded closely with PFC concentration. Concentrations of PFCs in largemouth bass varied significantly across the sampled lakes, where the lowest concentrations were found in Steiger and Upper Prior Lakes and the highest concentrations were found in Calhoun and Twin Lakes. Patterns of gene expression were most different (relative to controls) in fish with the highest PFC tissue concentrations, where fish from Twin and Calhoun Lakes were observed to have between 5437 and 5936 differentially expressed genes in liver and gonad tissues. Although gene expression patterns demonstrated a high degree of correlation with PFC concentrations, microarray data also suggest there are likely additional factors influencing gene expression patterns in largemouth bass in TCMA lakes.
2014-07-31 | GSE57684 | GEO
Project description:The Water Framework Directive (WFD) requires Member States to develop appropriate assessment methods for the classification of the ecological status of their surface waters. Mediterranean region has lagged behind in this task, so we propose here the first developed method for Greek lakes, Hellenic Lake Macrophyte (HeLM) assessment method. This method is based on two metrics, a modified trophic index and maximum colonization depth Cmax that quantify the degree of changes in lake macrophytic vegetation, as a response to eutrophication and general degradation pressures. The method was developed on the basis of a data set sampled from 272 monitoring transects in 16 Greek lakes. Sites from three lakes were selected as potential reference sites by using a screening process. Ecological quality ratios were calculated for each metric and for each lake, and ecological status class boundaries were defined. For the evaluation of effectiveness of the method, the correlations between individual metrics and final HeLM values and common pressure indicators, such as total phosphorus, chlorophyll a and Secchi depth, were tested and found highly significant and relatively strong. In addition, the ability of HeLM values and its individual metrics to distinguish between different macrophytic communities' structure was checked using aquatic plant life-forms and found satisfactory. The HeLM method gave a reliable assessment of the macrophytic vegetation's condition in Greek lakes and may constitute a useful tool for the classification of ecological status of other Mediterranean lakes.
| S-EPMC5937868 | biostudies-other
Project description:People value the existence of a variety of marine species and habitats, many of which are negatively impacted by human activities. The Convention on Biological Diversity and other international and national policy agreements have set broad goals for reducing the rate of biodiversity loss. However, efforts to conserve biodiversity cannot be effective without comprehensive metrics both to assess progress towards meeting conservation goals and to account for measures that reduce pressures so that positive actions are encouraged. We developed an index based on a global assessment of the condition of marine biodiversity using publically available data to estimate the condition of species and habitats within 151 coastal countries. Our assessment also included data on social and ecological pressures on biodiversity as well as variables that indicate whether good governance is in place to reduce them. Thus, our index is a social as well as ecological measure of the current and likely future status of biodiversity. As part of our analyses, we set explicit reference points or targets that provide benchmarks for success and allow for comparative assessment of current conditions. Overall country-level scores ranged from 43 to 95 on a scale of 1 to 100, but countries that scored high for species did not necessarily score high for habitats. Although most current status scores were relatively high, likely future status scores for biodiversity were much lower in most countries due to negative trends for both species and habitats. We also found a strong positive relationship between the Human Development Index and resilience measures that could promote greater sustainability by reducing pressures. This relationship suggests that many developing countries lack effective governance, further jeopardizing their ability to maintain species and habitats in the future.
| S-EPMC3623975 | biostudies-literature
Project description:Eutrophication impairs lake ecosystems at a global scale. In this context, as benthic microalgae are well-established warnings for a large range of stressors, particularly nutrient enrichment, the Water Framework Directive required the development of diatom-based methods to monitor lake eutrophication. Here, we present the diatom-based index we developed for French lakes, named IBDL (Indice Biologique Diatomées en Lacs). Data were collected in 93 lakes from 2015 to 2020. A challenge arose from the discontinuous pressure gradient of our dataset, especially the low number of nutrient-impacted lakes. To analyze the data we opted for the so-called "Threshold Indicator Taxa ANalysis" method, which makes it possible to determine a list of "alert taxa." We obtained a multimetric index based on specific pressure gradients (Kjeldahl nitrogen, suspended matter, biological oxygen demand, and total phosphorous). Considering the European intercalibration process, the very good correlation between IBDL and the common metric (R2 from 0.52 to 0.87 according to the lake alkalinity type) makes us very confident in our ability to match future IBDL quality thresholds with European standards. The IBDL proved at last to be particularly relevant as it has a twofold interest: an excellent relationship with total phosphorus (R2 from 0.63 to 0.83 according to the lake alkalinity type) and a possible application to any lake metatype. Its complementarity with macrophyte-based indices moreover justifies the use of at least two primary producer components for lake ecological status classification.
| S-EPMC10499699 | biostudies-literature
Project description:Increases in terrestrially-derived dissolved organic matter (DOM) have led to the browning of inland waters across regions of northeastern North America and Europe. Short-term experimental and comparative studies highlight the important ecological consequences of browning. These range from transparency-induced increases in thermal stratification and oxygen (O2) depletion to changes in pelagic food web structure and alteration of the important role of inland waters in the global carbon cycle. However, multi-decadal studies that document the net ecological consequences of long-term browning are lacking. Here we show that browning over a 27 year period in two lakes of differing transparency resulted in fundamental changes in vertical habitat gradients and food web structure, and that these responses were stronger in the more transparent lake. Surface water temperatures increased by 2-3 °C in both lakes in the absence of any changes in air temperature. Water transparency to ultraviolet (UV) radiation showed a fivefold decrease in the more transparent lake. The primary zooplankton grazers decreased, and in the more transparent lake were largely replaced by a two trophic level zooplankton community. These findings provide new insights into the net effects of the complex and contrasting mechanisms that underlie the ecosystem consequences of browning.
| S-EPMC4687041 | biostudies-other
Project description:We synthesize the information available from the peer-reviewed literature on the ecological status of lakes and rivers in the oil sands region (OSR) of Canada. The majority of the research from the OSR has been performed in or near the minable region and examines the concentrations, flux, or enrichment of contaminants of concern (CoCs). Proximity to oil sands facilities and the beginning of commercial activities tend to be associated with greater estimates of CoCs across studies. Research suggests the higher measurements of CoCs are typically associated with wind-blown dust, but other sources also contribute. Exploratory analyses further suggest relationships with facility production and fuel use data. Exceedances of environmental quality guidelines for CoCs are also reported in lake sediments, but there are no indications of toxicity including those within the areas of the greatest atmospheric deposition. Instead, primary production has increased in most lakes over time. Spatial differences are observed in streams, but causal relationships with industrial activity are often confounded by substantial natural influences. Despite this, there may be signals associated with site preparation for new mines, potential persistent differences, and a potential effect of petroleum coke used as fuel on some indices of health in fish captured in the Steepbank River. There is also evidence of improvements in the ecological condition of some rivers. Despite the volume of material available, much of the work remains temporally, spatially, or technically isolated. Overcoming the isolation of studies would enhance the utility of information available for the region, but additional recommendations for improving monitoring can be made, such as a shift to site-specific analyses in streams and further use of industry-reported data. Integr Environ Assess Manag 2022;18:361-387. © 2021 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).
| S-EPMC9298303 | biostudies-literature
Project description:Potamogeton crispus is widely used in submerged macrophyte restoration in China. Turions are an important means of reproduction in this species. To compare the regeneration abilities of P. crispus turions in macrophyte- and phytoplankton-dominated lakes, we collected P. crispus turions from a macrophyte-dominated lake (Liangzi Lake) and a phytoplankton-dominated lake (Taihu Lake). Both lakes are important lakes in the middle and lower reaches of the Yangtze River in China. Our field survey revealed that the turions from the phytoplankton-dominated lake had smaller sizes and higher concentrations of total nitrogen (TN) and total phosphorus (TP) than did those from the macrophyte-dominated lake. Rapid sprouting of the turions from the phytoplankton-dominated lake in 32 days was observed under experimental conditions, although the sprout sizes (heights and biomass) were smaller than those from the macrophyte-dominated lake. Compared with sprouted turions from macrophyte-dominated lake, the sprouted turions from the phytoplankton-dominated lake accumulated higher soluble sugar (SS) but lower starch and free amino acid (FAA) concentrations. A 12-day interval sprout removal treatment significantly stimulated the re-sprouting of turions from both lakes, but scale-leaf-removal treatments had no effect. This study provides evidence that the regeneration strategies of P. crispus turions differ in macrophyte- and phytoplankton-dominated lakes.
| S-EPMC4526853 | biostudies-other
Project description:Submerged macrophytes are key components of shallow lake biological communities, and their presence has been associated with a predominantly clear-water state. Conversely, lakes lacking macrophytes are often turbid with elevated phytoplankton abundance. One main mechanism that influences the presence or absence of submerged macrophytes is turbidity that reduces the light available to macrophytes. Increases in turbidity can be caused by increased phytoplankton abundance and by increased concentrations of suspended inorganic sediment and understanding the relative contributions of these two factors can inform efforts to manage the effects of increased turbidity on macrophyte occurrence. Here, a continental scale data set is analyzed to quantify the effects of macrophytes on turbidity that originates from phytoplankton and from non-phytoplankton sources (e.g., inorganic sediment). Effects of phytoplankton assemblage composition on turbidity are also estimated. Based on this model, illustrative examples of chlorophyll concentrations needed to maintain or restore macrophytes to shallow lakes are calculated, and the difference in the magnitude of these concentrations illustrates the stabilizing effect of macrophytes on lake condition.
| S-EPMC8340603 | biostudies-literature
Project description:Submerged macrophytes play a key role in north temperate shallow lakes by stabilizing clear-water conditions. Eutrophication has resulted in macrophyte loss and shifts to turbid conditions in many lakes. Considerable efforts have been devoted to shallow lake restoration in many countries, but long-term success depends on a stable recovery of submerged macrophytes. However, recovery patterns vary widely and remain to be fully understood. We hypothesize that reduced external nutrient loading leads to an intermediate recovery state with clear spring and turbid summer conditions similar to the pattern described for eutrophication. In contrast, lake internal restoration measures can result in transient clear-water conditions both in spring and summer and reversals to turbid conditions. Furthermore, we hypothesize that these contrasting restoration measures result in different macrophyte species composition, with added implications for seasonal dynamics due to differences in plant traits. To test these hypotheses, we analyzed data on water quality and submerged macrophytes from 49 north temperate shallow lakes that were in a turbid state and subjected to restoration measures. To study the dynamics of macrophytes during nutrient load reduction, we adapted the ecosystem model PCLake. Our survey and model simulations revealed the existence of an intermediate recovery state upon reduced external nutrient loading, characterized by spring clear-water phases and turbid summers, whereas internal lake restoration measures often resulted in clear-water conditions in spring and summer with returns to turbid conditions after some years. External and internal lake restoration measures resulted in different macrophyte communities. The intermediate recovery state following reduced nutrient loading is characterized by a few macrophyte species (mainly pondweeds) that can resist wave action allowing survival in shallow areas, germinate early in spring, have energy-rich vegetative propagules facilitating rapid initial growth and that can complete their life cycle by early summer. Later in the growing season these plants are, according to our simulations, outcompeted by periphyton, leading to late-summer phytoplankton blooms. Internal lake restoration measures often coincide with a rapid but transient colonization by hornworts, waterweeds or charophytes. Stable clear-water conditions and a diverse macrophyte flora only occurred decades after external nutrient load reduction or when measures were combined.
| S-EPMC5826081 | biostudies-literature
Project description:BackgroundThis paper provides current data on the biodiversity of boreal lakes of the Vologda Region (north-western Russia), including macrophytes (vascular plants and macroscopic algae) and macrophyte inhabitants (invertebrates and microalgae). The raw data, given in two datasets (Sampling event dataset and an Occurrence dataset) and presented in the form of GBIF-mediated data, were collected from 139 lakes (macrophytes between 2005 and 2021, macrophyte inhabitants between 2014 and 2020). The dataset contains materials on the diversity of vascular plants (Tracheophyta, 3225 occurrences; Bryophyta, 155; Marchantiophyta, 16), macro- and microalgae (Ochrophyta, 546 occurrences; Chlorophyta, 193; Charophyta, 153; Cyanobacteria, 139; Cryptophyta, 86; Myzozoa, 33; Euglenozoa, 27; Rhodophyta, 8; Bigyra, 1) and aquatic invertebrates (Arthropoda, 1408 occurrences; Annelida, 487; Mollusca, 263; Platyhelminthes, 36; Cnidaria, 11). This paper summarises previously unpublished materials in a standardised form.New informationThe paper summarises the data collected during the long-term phytodiversity studies in a series of lakes of different types (Vologda Region, north-western Russia). Data on algae and invertebrates diversity were obtained in 60 different plant communities of aquatic, semi-aquatic and coastal plants or their combinations. A total of 6787 occurrences were included in the dataset, published in the global biodiversity database (GBIF) for the first time. According to the GBIF taxonomic backbone, the dataset comprised 837 taxa, including 711 lower-rank taxa (species, subspecies, varieties, forms). New records of 47 species rare and protected in the Vologda Region are given: 43 species of plants, three species of animals and one species of Cyanobacteria.
| S-EPMC8795070 | biostudies-literature