Dataset Information

Using random walks to generate associations between objects.

ABSTRACT: Measuring similarities between objects based on their attributes has been an important problem in many disciplines. Object-attribute associations can be depicted as links on a bipartite graph. A similarity measure can be thought as a unipartite projection of this bipartite graph. The most widely used bipartite projection techniques make assumptions that are not often fulfilled in real life systems, or have the focus on the bipartite connections more than on the unipartite connections. Here, we define a new similarity measure that utilizes a practical procedure to extract unipartite graphs without making a priori assumptions about underlying distributions. Our similarity measure captures the relatedness between two objects via the likelihood of a random walker passing through these nodes sequentially on the bipartite graph. An important aspect of the method is that it is robust to heterogeneous bipartite structures and it controls for the transitivity similarity, avoiding the creation of unrealistic homogeneous degree distributions in the resulting unipartite graphs. We test this method using real world examples and compare the obtained results with alternative similarity measures, by validating the actual and orthogonal relations between the entities.

SUBMITTER: Yildirim MA

PROVIDER: S-EPMC4143196 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature

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Using random walks to generate associations between objects.

Yildirim Muhammed A MA Coscia Michele M

PloS one 20140825 8

Measuring similarities between objects based on their attributes has been an important problem in many disciplines. Object-attribute associations can be depicted as links on a bipartite graph. A similarity measure can be thought as a unipartite projection of this bipartite graph. The most widely used bipartite projection techniques make assumptions that are not often fulfilled in real life systems, or have the focus on the bipartite connections more than on the unipartite connections. Here, we d ...[more]

PMID: 25153830

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Dataset Information

Using random walks to generate associations between objects.

Publications

Using random walks to generate associations between objects.

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