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A systematic approach to identify novel cancer drug targets using machine learning, inhibitor design and high-throughput screening.


ABSTRACT: We present an integrated approach that predicts and validates novel anti-cancer drug targets. We first built a classifier that integrates a variety of genomic and systematic datasets to prioritize drug targets specific for breast, pancreatic and ovarian cancer. We then devised strategies to inhibit these anti-cancer drug targets and selected a set of targets that are amenable to inhibition by small molecules, antibodies and synthetic peptides. We validated the predicted drug targets by showing strong anti-proliferative effects of both synthetic peptide and small molecule inhibitors against our predicted targets.

SUBMITTER: Jeon J 

PROVIDER: S-EPMC4143549 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature

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A systematic approach to identify novel cancer drug targets using machine learning, inhibitor design and high-throughput screening.

Jeon Jouhyun J   Nim Satra S   Teyra Joan J   Datti Alessandro A   Wrana Jeffrey L JL   Sidhu Sachdev S SS   Moffat Jason J   Kim Philip M PM  

Genome medicine 20140730 7


We present an integrated approach that predicts and validates novel anti-cancer drug targets. We first built a classifier that integrates a variety of genomic and systematic datasets to prioritize drug targets specific for breast, pancreatic and ovarian cancer. We then devised strategies to inhibit these anti-cancer drug targets and selected a set of targets that are amenable to inhibition by small molecules, antibodies and synthetic peptides. We validated the predicted drug targets by showing s  ...[more]

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