Dataset Information

Space-Time Areal Mixture Model: Relabeling Algorithm and Model Selection Issues.

ABSTRACT: With the growing popularity of spatial mixture models in cluster analysis, model selection criteria have become an established tool in the search for parsimony. However, the label-switching problem is often inherent in Bayesian implementation of mixture models and a variety of relabeling algorithms have been proposed. We use a space-time mixture of Poisson regression models with homogeneous covariate effects to illustrate that the best model selected by using model selection criteria does not always support the model that is chosen by the optimal relabeling algorithm. The results are illustrated for real and simulated datasets. The objective is to make the reader aware that if the purpose of statistical modeling is to identify clusters, applying a relabeling algorithm to the model with the best fit may not generate the optimal relabeling.

SUBMITTER: Hossain MM

PROVIDER: S-EPMC4159962 | biostudies-literature | 2014 Mar

REPOSITORIES: biostudies-literature

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Space-Time Areal Mixture Model: Relabeling Algorithm and Model Selection Issues.

Hossain M M MM Lawson A B AB Cai B B Choi J J Liu J J Kirby R S RS

Environmetrics 20140301 2

With the growing popularity of spatial mixture models in cluster analysis, model selection criteria have become an established tool in the search for parsimony. However, the label-switching problem is often inherent in Bayesian implementation of mixture models and a variety of relabeling algorithms have been proposed. We use a space-time mixture of Poisson regression models with homogeneous covariate effects to illustrate that the best model selected by using model selection criteria does not al ...[more]

PMID: 25221430

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Project description:BackgroundTight clustering arose recently from a desire to obtain tighter and potentially more informative clusters in gene expression studies. Scattered genes with relatively loose correlations should be excluded from the clusters. However, in the literature there is little work dedicated to this area of research. On the other hand, there has been extensive use of maximum likelihood techniques for model parameter estimation. By contrast, the minimum distance estimator has been largely ignored.ResultsIn this paper we show the inherent robustness of the minimum distance estimator that makes it a powerful tool for parameter estimation in model-based time-course clustering. To apply minimum distance estimation, a partial mixture model that can naturally incorporate replicate information and allow scattered genes is formulated. We provide experimental results of simulated data fitting, where the minimum distance estimator demonstrates superior performance to the maximum likelihood estimator. Both biological and statistical validations are conducted on a simulated dataset and two real gene expression datasets. Our proposed partial regression clustering algorithm scores top in Gene Ontology driven evaluation, in comparison with four other popular clustering algorithms.ConclusionFor the first time partial mixture model is successfully extended to time-course data analysis. The robustness of our partial regression clustering algorithm proves the suitability of the combination of both partial mixture model and minimum distance estimator in this field. We show that tight clustering not only is capable to generate more profound understanding of the dataset under study well in accordance to established biological knowledge, but also presents interesting new hypotheses during interpretation of clustering results. In particular, we provide biological evidences that scattered genes can be relevant and are interesting subjects for study, in contrast to prevailing opinion.

Dataset Information

Space-Time Areal Mixture Model: Relabeling Algorithm and Model Selection Issues.

Publications

Space-Time Areal Mixture Model: Relabeling Algorithm and Model Selection Issues.

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