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An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation.

ABSTRACT: MAGIC populations represent one of a new generation of crop genetic mapping resources combining high genetic recombination and diversity. We describe the creation and validation of an eight-parent MAGIC population consisting of 1091 F7 lines of winter-sown wheat (Triticum aestivum L.). Analyses based on genotypes from a 90,000-single nucleotide polymorphism (SNP) array find the population to be well-suited as a platform for fine-mapping quantitative trait loci (QTL) and gene isolation. Patterns of linkage disequilibrium (LD) show the population to be highly recombined; genetic marker diversity among the founders was 74% of that captured in a larger set of 64 wheat varieties, and 54% of SNPs segregating among the 64 lines also segregated among the eight founder lines. In contrast, a commonly used reference bi-parental population had only 54% of the diversity of the 64 varieties with 27% of SNPs segregating. We demonstrate the potential of this MAGIC resource by identifying a highly diagnostic marker for the morphological character "awn presence/absence" and independently validate it in an association-mapping panel. These analyses show this large, diverse, and highly recombined MAGIC population to be a powerful resource for the genetic dissection of target traits in wheat, and it is well-placed to efficiently exploit ongoing advances in phenomics and genomics. Genetic marker and trait data, together with instructions for access to seed, are available at http://www.niab.com/MAGIC/.

SUBMITTER: Mackay IJ

PROVIDER: S-EPMC4169152 | biostudies-literature | 2014 Sep

REPOSITORIES: biostudies-literature

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An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation.

Mackay Ian J IJ Bansept-Basler Pauline P Barber Toby T Bentley Alison R AR Cockram James J Gosman Nick N Greenland Andy J AJ Horsnell Richard R Howells Rhian R O'Sullivan Donal M DM Rose Gemma A GA Howell Phil J PJ

G3 (Bethesda, Md.) 20140918 9

MAGIC populations represent one of a new generation of crop genetic mapping resources combining high genetic recombination and diversity. We describe the creation and validation of an eight-parent MAGIC population consisting of 1091 F7 lines of winter-sown wheat (Triticum aestivum L.). Analyses based on genotypes from a 90,000-single nucleotide polymorphism (SNP) array find the population to be well-suited as a platform for fine-mapping quantitative trait loci (QTL) and gene isolation. Patterns ...[more]

PMID: 25237112

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Project description:Wheat (Triticum aestivum L.) is the most widely-grown crop in the Mediterranean semi-arid (150-400 mm) cropping zones of both southern Australia and the inland Pacific Northwest (PNW) of the United States of America (United States). Low precipitation, low winter temperatures and heat and drought conditions during late spring and summer limit wheat yields in both regions. Due to rising temperatures, reduced autumn rainfall and increased frost risk in southern Australia since 1990, cropping conditions in these two environments have grown increasingly similar. This presents the opportunity for southern Australian growers to learn from the experiences of their PNW counterparts. Wheat cultivars with an obligate vernalization requirement (winter wheat), are an integral part of semi-arid PNW cropping systems, but in Australia are most frequently grown in cool or cold temperate cropping zones that receive high rainfall (>500 mm p.a.). It has recently been shown that early-sown winter wheat cultivars can increase water-limited potential yield in semi-arid southern Australia, in the face of decreasing autumn rainfall. Despite this research, there has to date been little breeding effort invested in winter wheat for growers in semi-arid southern Australia, and agronomic research into the management of early-sown winter wheat has only occurred in recent years. This paper explores the current and emerging environmental constraints of cropping in semi-arid southern Australia and, using the genotype × management strategies developed over 120 years of winter wheat agronomy in the PNW, highlights the potential advantages early-sown winter wheat offers growers in low-rainfall environments. The increased biomass, stable flowering time and late-summer establishment opportunities offered by winter wheat genotypes ensure they achieve higher yields in the PNW compared to later-sown spring wheat. Traits that make winter wheat advantageous in the PNW may also contribute to increased yield when grown in semi-arid southern Australia. This paper investigates which specific traits present in winter wheat genotypes give them an advantage in semi-arid cropping environments, which management practices best exploit this advantage, and what potential improvements can be made to cultivars for semi-arid southern Australia based on the history of winter wheat crop growth in the semi-arid Pacific Northwest.

Dataset Information

An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation.

Publications

An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation.

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