Dataset Information

MRI-based Algorithm for Acute Ischemic Stroke Subtype Classification.

ABSTRACT: BACKGROUND AND PURPOSE:In order to improve inter-rater reliability and minimize diagnosis of undetermined etiology for stroke subtype classification, using a stroke registry, we developed and implemented a magnetic resonance imaging (MRI)-based algorithm for acute ischemic stroke subtype classification (MAGIC). METHODS:We enrolled patients who experienced an acute ischemic stroke, were hospitalized in the 14 participating centers within 7 days of onset, and had relevant lesions on MR-diffusion weighted imaging (DWI). MAGIC was designed to reflect recent advances in stroke imaging and thrombolytic therapy. The inter-rater reliability was compared with and without MAGIC to classify the Trial of Org 10172 in Acute Stroke Treatment (TOAST) of each stroke patient. MAGIC was then applied to all stroke patients hospitalized since July 2011, and information about stroke subtypes, other clinical characteristics, and stroke recurrence was collected via a web-based registry database. RESULTS:The overall intra-class correlation coefficient (ICC) value was 0.43 (95% CI, 0.31-0.57) for MAGIC and 0.28 (95% CI, 0.18-0.42) for TOAST. Large artery atherosclerosis (LAA) was the most common cause of acute ischemic stroke (38.3%), followed by cardioembolism (CE, 22.8%), undetermined cause (UD, 22.2%), and small-vessel occlusion (SVO, 14.6%). One-year stroke recurrence rates were the highest for two or more UDs (11.80%), followed by LAA (7.30%), CE (5.60%), and SVO (2.50%). CONCLUSIONS:Despite several limitations, this study shows that the MAGIC system is feasible and may be helpful to classify stroke subtype in the clinic.

SUBMITTER: Ko Y

PROVIDER: S-EPMC4200592 | biostudies-literature | 2014 Sep

REPOSITORIES: biostudies-literature

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MRI-based Algorithm for Acute Ischemic Stroke Subtype Classification.

Ko Youngchai Y Lee SooJoo S Chung Jong-Won JW Han Moon-Ku MK Park Jong-Moo JM Kang Kyusik K Park Tai Hwan TH Park Sang-Soon SS Cho Yong-Jin YJ Hong Keun-Sik KS Lee Kyung Bok KB Lee Jun J Kim Dong-Eog DE Kim Dae-Hyun DH Cha Jae-Kwan JK Kim Joon-Tae JT Choi Jay Chol JC Shin Dong-Ick DI Lee Ji Sung JS Lee Juneyoung J Yu Kyung-Ho KH Lee Byung-Chul BC Bae Hee-Joon HJ

Journal of stroke 20140930 3

<h4>Background and purpose</h4>In order to improve inter-rater reliability and minimize diagnosis of undetermined etiology for stroke subtype classification, using a stroke registry, we developed and implemented a magnetic resonance imaging (MRI)-based algorithm for acute ischemic stroke subtype classification (MAGIC).<h4>Methods</h4>We enrolled patients who experienced an acute ischemic stroke, were hospitalized in the 14 participating centers within 7 days of onset, and had relevant lesions on ...[more]

PMID: 25328874

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Project description:BackgroundPrognosis, recurrence rate, and secondary prevention strategies differ by different etiologies in acute ischemic stroke. However, identifying its cause is challenging.ObjectiveThis study aimed to develop a model to identify the cause of stroke using machine learning (ML) methods and test its accuracy.MethodsWe retrospectively reviewed the data of patients who had determined etiology defined by the Trial of ORG 10172 in Acute Stroke Treatment (TOAST) from CASE-II (NCT04487340) to train and evaluate six ML models, namely, Random Forests (RF), Logistic Regression (LR), Extreme Gradient Boosting (XGBoost), K-Nearest Neighbor (KNN), Ada Boosting, Gradient Boosting Machine (GBM), for the detection of cardioembolism (CE), large-artery atherosclerosis (LAA), and small-artery occlusion (SAO). Between October 2016 and April 2020, patients were enrolled consecutively for algorithm development (phase one). Between June 2020 and December 2020, patients were enrolled consecutively in a test set for algorithm test (phase two). Area under the curve (AUC), precision, recall, accuracy, and F1 score were calculated for the prediction model.ResultsFinally, a total of 18,209 patients were enrolled in phase one, including 13,590 patients (i.e., 6,089 CE, 4,539 LAA, and 2,962 SAO) in the model, and a total of 3,688 patients were enrolled in phase two, including 3,070 patients (i.e., 1,103 CE, 1,269 LAA, and 698 SAO) in the model. Among the six models, the best models were RF, XGBoost, and GBM, and we chose the RF model as our final model. Based on the test set, the AUC values of the RF model to predict CE, LAA, and SAO were 0.981 (95%CI, 0.978-0.986), 0.919 (95%CI, 0.911-0.928), and 0.918 (95%CI, 0.908-0.927), respectively. The most important items to identify CE, LAA, and SAO were atrial fibrillation and degree of stenosis of intracranial arteries.ConclusionThe proposed RF model could be a useful diagnostic tool to help neurologists categorize etiologies of stroke.Clinical trial registration[www.ClinicalTrials.gov], identifier [NCT01274117].

Project description:PurposeRecently, a large number of patients with acute ischemic stroke benefited from the use of thrombectomy, a minimally invasive intervention technique for mechanically removing thrombi from the cerebrovasculature. During thrombectomy, 2D digital subtraction angiography (DSA) image sequences are acquired simultaneously from the posterior-anterior and the lateral view to control whether thrombus removal was successful, and to possibly detect newly occluded areas caused by thrombus fragments split from the main thrombus. However, such new occlusions, which would be treatable by thrombectomy, may be overlooked during the intervention. To prevent this, we developed a deep learning-based approach to automatic classification of DSA sequences into thrombus-free and non-thrombus-free sequences.MethodsWe performed a retrospective study based on the single-center DSA data of thrombectomy patients. For classifying the DSA sequences, we applied Long Short-Term Memory or Gated Recurrent Unit networks and combined them with different Convolutional Neural Networks used as feature extractor. These network variants were trained on the DSA data by using five-fold cross-validation. The classification performance was determined on a test data set with respect to the Matthews correlation coefficient (MCC) and the area under the curve (AUC). Finally, we evaluated our models on patient cases, in which overlooking thrombi during thrombectomy had happened.ResultsDepending on the specific model configuration used, we obtained a performance of up to 0.77[Formula: see text]0.94 for the MCC[Formula: see text]AUC, respectively. Additionally, overlooking thrombi could have been prevented in the reported patient cases, as our models would have classified the corresponding DSA sequences correctly.ConclusionOur deep learning-based approach to thrombus identification in DSA sequences yielded high accuracy on our single-center test data set. External validation is now required to investigate the generalizability of our method. As demonstrated, using this new approach may help reduce the incident risk of overlooking thrombi during thrombectomy in the future.

Project description:BackgroundDifficulties in detecting brain lesions in acute ischemic stroke (AIS) have convinced researchers to use computed tomography (CT) to scan for and magnetic resonance imaging (MRI) to search for these lesions. This work aimed to develop a generative adversarial network (GAN) model for CT-to-MR image synthesis and evaluate reader performance with synthetic MRI (syn-MRI) in detecting brain lesions in suspected patients.MethodsPatients with primarily suspected AIS were randomly assigned to the training (n=140) or testing (n=53) set. Emergency CT and follow-up MR images in the training set were used to develop a GAN model to generate syn-MR images from the CT data in the testing set. The standard reference was the manual segmentations of follow-up MR images. Image similarity was evaluated between syn-MRI and the ground truth using a 4-grade visual rating scale, the peak signal-to-noise ratio (PSNR), and the structural similarity index measure (SSIM). Reader performance with syn-MRI and CT was evaluated and compared on a per-patient (patient detection) and per-lesion (lesion detection) basis. Paired t-tests or Wilcoxon signed-rank tests were used to compare reader performance in lesion detection between the syn-MRI and CT data.ResultsGrade 2-4 brain lesions were observed on syn-MRI in 92.5% (49/53) of the patients, while the remaining syn-MRI data showed no lesions compared to the ground truth. The GAN model exhibited a weak PSNR of 24.30 dB but a favorable SSIM of 0.857. Compared with CT, syn-MRI led to an increase in the overall sensitivity from 38% (57/150) to 82% (123/150) in patient detection and from 4% (68/1,620) to 16% (262/1,620) in lesion detection (R=0.32, corrected P<0.001), but the specificity in patient detection decreased from 67% (6/9) to 33% (3/9). An additional 75% (70/93) of patients and 15% (77/517) of lesions missed on CT were detected on syn-MRI.ConclusionsThe GAN model holds potential for generating synthetic MR images from noncontrast CT data and thus could help sensitively detect individuals among patients with suspected AIS. However, the image similarity performance of the model needs to be improved, and further expert discrimination is strongly recommended.

Dataset Information

MRI-based Algorithm for Acute Ischemic Stroke Subtype Classification.

Publications

MRI-based Algorithm for Acute Ischemic Stroke Subtype Classification.

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