Ontology highlight
ABSTRACT:
SUBMITTER: Kim H
PROVIDER: S-EPMC4237674 | biostudies-literature | 2014 Dec
REPOSITORIES: biostudies-literature
Kim Hyungrae H Kihara Daisuke D
Proteins 20141030 12
We developed a new representation of local amino acid environments in protein structures called the Side-chain Depth Environment (SDE). An SDE defines a local structural environment of a residue considering the coordinates and the depth of amino acids that locate in the vicinity of the side-chain centroid of the residue. SDEs are general enough that similar SDEs are found in protein structures with globally different folds. Using SDEs, we developed a procedure called PRESCO (Protein Residue Envi ...[more]