SNPAAMapperT2K: A genome-wide SNP downstream analysis and annotation pipeline for species annotated with NCBI.tbl data files.
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ABSTRACT:
SUBMITTER: Bai Y
PROVIDER: S-EPMC4261118 | biostudies-literature | 2014
REPOSITORIES: biostudies-literature
Publications
SNPAAMapperT2K: A genome-wide SNP downstream analysis and annotation pipeline for species annotated with NCBI.tbl data files.
Bioinformation 20141127 11
<h4>Unlabelled</h4>SNPAAMapper, a genome-wide SNP downstream analysis and annotation pipeline, was designed to classify detected variants according to genomic regions and report the mutation class by processing whole-genome and/or whole-exome sequencing data. A widely used sequence and data annotation table format "knownGene.txt" has not yet been created for many popular model organisms (e.g. Arabidopsis). Instead, NCBI .tbl annotation format files are provided for these species. Therefore, it i ...[more]
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