Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Observation of ice-like water layers at an aqueous protein surface.

ABSTRACT: We study the properties of water at the surface of an antifreeze protein with femtosecond surface sum frequency generation spectroscopy. We find clear evidence for the presence of ice-like water layers at the ice-binding site of the protein in aqueous solution at temperatures above the freezing point. Decreasing the temperature to the biological working temperature of the protein (0 °C to -2 °C) increases the amount of ice-like water, while a single point mutation in the ice-binding site is observed to completely disrupt the ice-like character and to eliminate antifreeze activity. Our observations indicate that not the protein itself but ordered ice-like water layers are responsible for the recognition and binding to ice.

SUBMITTER: Meister K

PROVIDER: S-EPMC4273357 | biostudies-literature | 2014 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Observation of ice-like water layers at an aqueous protein surface.

Meister Konrad K Strazdaite Simona S DeVries Arthur L AL Lotze Stephan S Olijve Luuk L C LL Voets Ilja K IK Bakker Huib J HJ

Proceedings of the National Academy of Sciences of the United States of America 20141202 50

We study the properties of water at the surface of an antifreeze protein with femtosecond surface sum frequency generation spectroscopy. We find clear evidence for the presence of ice-like water layers at the ice-binding site of the protein in aqueous solution at temperatures above the freezing point. Decreasing the temperature to the biological working temperature of the protein (0 °C to -2 °C) increases the amount of ice-like water, while a single point mutation in the ice-binding site is obse ...[more]

PMID: 25468976

Similar Datasets

Observation of pH-Induced Protein Reorientation at the Water Surface.

Project description:Hydrophobins are surface-active proteins that form a hydrophobic, water-repelling film around aerial fungal structures. They have a compact, particle-like structure, in which hydrophilic and hydrophobic regions are spatially separated. This surface property renders them amphiphilic and is reminiscent of synthetic Janus particles. Here we report surface-specific chiral and nonchiral vibrational sum-frequency generation spectroscopy (VSFG) measurements of hydrophobins adsorbed to their natural place of action, the air-water interface. We observe that hydrophobin molecules undergo a reversible change in orientation (tilt) at the interface when the pH is varied. We explain this local orientation toggle from the modification of the interprotein interactions and the interaction of hydrophobin with the water solvent, following the pH-induced change of the charge state of particular amino acids.

| S-EPMC5451149 | biostudies-literature

Oxygen production from dissociation of Europa's water-ice surface.

Project description:Jupiter's moon Europa has a predominantly water-ice surface that is modified by exposure to its space environment. Charged particles break molecular bonds in surface ice, thus dissociating the water to ultimately produce H2 and O2, which provides a potential oxygenation mechanism for Europa's subsurface ocean. These species are understood to form Europa's primary atmospheric constituents. Although remote observations provide important global constraints on Europa's atmosphere, the molecular O2 abundance has been inferred from atomic O emissions. Europa's atmospheric composition had never been directly sampled and model-derived oxygen production estimates ranged over several orders of magnitude. Here, we report direct observations of H2+ and O2+ pickup ions from the dissociation of Europa's water-ice surface and confirm these species are primary atmospheric constituents. In contrast to expectations, we find the H2 neutral atmosphere is dominated by a non-thermal, escaping population. We find 12 ± 6 kg s-1 (2.2 ± 1.2 × 1026 s-1) O2 are produced within Europa's surface, less than previously thought, with a narrower range to support habitability in Europa's ocean. This process is found to be Europa's dominant exogenic surface erosion mechanism over meteoroid bombardment.

| S-EPMC11111413 | biostudies-literature

Warm early Mars surface enabled by high-altitude water ice clouds.

Project description:Despite receiving just 30% of the Earth's present-day insolation, Mars had water lakes and rivers early in the planet's history, due to an unknown warming mechanism. A possible explanation for the >102-y-long lake-forming climates is warming by water ice clouds. However, this suggested cloud greenhouse explanation has proved difficult to replicate and has been argued to require unrealistically optically thick clouds at high altitudes. Here, we use a global climate model (GCM) to show that a cloud greenhouse can warm a Mars-like planet to global average annual-mean temperature ([Formula: see text]) ∼265 K, which is warm enough for low-latitude lakes, and stay warm for centuries or longer, but only if the planet has spatially patchy surface water sources. Warm, stable climates involve surface ice (and low clouds) only at locations much colder than the average surface temperature. At locations horizontally distant from these surface cold traps, clouds are found only at high altitudes, which maximizes warming. Radiatively significant clouds persist because ice particles sublimate as they fall, moistening the subcloud layer so that modest updrafts can sustain relatively large amounts of cloud. The resulting climates are arid (area-averaged surface relative humidity ∼25%). In a warm, arid climate, lakes could be fed by groundwater upwelling, or by melting of ice following a cold-to-warm transition. Our results are consistent with the warm and arid climate favored by interpretation of geologic data, and support the cloud greenhouse hypothesis.

| S-EPMC8106349 | biostudies-literature

Observation and Identification of a New OH Stretch Vibrational Band at the Surface of Ice.

Project description:We study the signatures of the OH stretch vibrations at the basal surface of ice using heterodyne-detected sum-frequency generation and molecular dynamics simulations. At 150 K, we observe seven distinct modes in the sum-frequency response, five of which have an analogue in the bulk, and two pure surface-specific modes at higher frequencies (?3530 and ?3700 cm-1). The band at ?3530 cm-1 has not been reported previously. Using molecular dynamics simulations, we find that the ?3530 cm-1 band contains contributions from OH stretch vibrations of both fully coordinated interfacial water molecules and water molecules with two donor and one acceptor hydrogen bond.

| S-EPMC5545757 | biostudies-literature

Variations in the amount of water ice on Ceres' surface suggest a seasonal water cycle.

Project description:The dwarf planet Ceres is known to host a considerable amount of water in its interior, and areas of water ice were detected by the Dawn spacecraft on its surface. Moreover, sporadic water and hydroxyl emissions have been observed from space telescopes. We report the detection of water ice in a mid-latitude crater and its unexpected variation with time. The Dawn spectrometer data show a change of water ice signatures over a period of 6 months, which is well modeled as ~2-km2 increase of water ice. The observed increase, coupled with Ceres' orbital parameters, points to an ongoing process that seems correlated with solar flux. The reported variation on Ceres' surface indicates that this body is chemically and physically active at the present time.

| S-EPMC5851659 | biostudies-literature

Observation of Preferential Pathways for Oxygen Removal through Porous Transport Layers of Polymer Electrolyte Water Electrolyzers.

Project description:Understanding the relationships between porous transport layer (PTL) morphology and oxygen removal is essential to improve the polymer electrolyte water electrolyzer (PEWE) performance. Operando X-ray computed tomography and machine learning were performed on a model electrolyzer at different water flow rates and current densities to determine how these operating conditions alter oxygen transport in the PTLs. We report a direct observation of oxygen taking preferential pathways through the PTL, regardless of the water flow rate or current density (1-4 A/cm2). Oxygen distribution in the PTL had a periodic behavior with period of 400 μm. A computational fluid dynamics model was used to predict oxygen distribution in the PTL showing periodic oxygen front. Observed oxygen distribution is due to low in-plane PTL tortuosity and high porosity enabling merging of oxygen bubbles in the middle of the PTL and also due to aerophobicity of the layer.

| S-EPMC7691172 | biostudies-literature

The decisive role of free water in determining homogenous ice nucleation behavior of aqueous solutions.

Project description:It is a challenging issue to quantitatively characterize how the solute and pressure affect the homogeneous ice nucleation in a supercooled solution. By measuring the glass transition behavior of solutions, a universal feature of water-content dependence of glass transition temperature is recognized, which can be used to quantify hydration water in solutions. The amount of free water can then be determined for water-rich solutions, whose mass fraction, Xf, is found to serve as a universal relevant parameter for characterizing the homogeneous ice nucleation temperature, the meting temperature of primary ice, and even the water activity of solutions of electrolytes and smaller organic molecules. Moreover, the effects of hydrated solute and pressure on ice nucleation is comparable, and the pressure, when properly scaled, can be incorporated into the universal parameter Xf. These results help establish the decisive role of free water in determining ice nucleation and other relevant properties of aqueous solutions.

| S-EPMC4881027 | biostudies-literature

Direct evidence of surface exposed water ice in the lunar polar regions.

Project description:Water ice may be allowed to accumulate in permanently shaded regions on airless bodies in the inner solar system such as Mercury, the Moon, and Ceres [Watson K, et al. (1961) J Geophys Res 66:3033-3045]. Unlike Mercury and Ceres, direct evidence for water ice exposed at the lunar surface has remained elusive. We utilize indirect lighting in regions of permanent shadow to report the detection of diagnostic near-infrared absorption features of water ice in reflectance spectra acquired by the Moon Mineralogy Mapper [M (3)] instrument. Several thousand M (3) pixels (?280 × 280 m) with signatures of water ice at the optical surface (depth of less than a few millimeters) are identified within 20° latitude of both poles, including locations where independent measurements have suggested that water ice may be present. Most ice locations detected in M (3) data also exhibit lunar orbiter laser altimeter reflectance values and Lyman Alpha Mapping Project instrument UV ratio values consistent with the presence of water ice and also exhibit annual maximum temperatures below 110 K. However, only ?3.5% of cold traps exhibit ice exposures. Spectral modeling shows that some ice-bearing pixels may contain ?30 wt % ice that is intimately mixed with dry regolith. The patchy distribution and low abundance of lunar surface-exposed water ice might be associated with the true polar wander and impact gardening. The observation of spectral features of H2O confirms that water ice is trapped and accumulates in permanently shadowed regions of the Moon, and in some locations, it is exposed at the modern optical surface.

| S-EPMC6130389 | biostudies-literature

In-Situ ESEM and EELS Observation of Water Uptake and Ice Formation in Multilayer Graphene Oxide.

Project description:Graphene oxide (GO) is hydrophilic and swells significantly when in contact with water. Here, we investigate the change in thickness of multilayer graphene oxide membranes due to intercalation of water, via humidity-controlled observation in an environmental scanning electron microscope (ESEM). The thickness increases reproducibly with increasing relative humidity. Electron energy loss spectroscopy (EELS) reveals the existence of water ice under cryogenic conditions, even in high vacuum environment. Additionally, we demonstrate that freezing then thawing water trapped in the multilayer graphene oxide membrane leads to the opening up of micron-scale inter-lamellar voids due to the expansion of ice crystals.

| S-EPMC4488869 | biostudies-other

Surface-enhanced Raman scattering of water in aqueous dispersions of silver nanoparticles.

Project description:The resonance Raman effect (RRE) is a phenomenon which results in a strong selective enhancement of Raman signals from the samples. Previous studies showed that the RRE in liquid water directly corresponds to its supramolecular structure. It was also reported that the electric-field-induced orientation of water molecules on the electrode surface results in the surface-enhanced Raman scattering (SERS) effect. In this work, we show the SERS effect for water molecules in the dispersion of silver nanoparticles (AgNPs) without any external electrical field. An enhancement factor was estimated to be (4.8 ± 0.8) × 106 for an excitation wavelength of 514.5 nm and for AgNPs with an average size of 34 ± 14 nm. The temperature experiment results showed a higher enhancement with temperature increase. Performed simulation studies revealed a slowdown of the mobility of the water molecules close to the surface of AgNPs.

| S-EPMC8182675 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data