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Enlight: web-based integration of GWAS results with biological annotations.


ABSTRACT: Identifying causal variants remains a key challenge in post-GWAS (genome-wide association study) era, as many GWAS single-nucleotide polymorphisms (SNPs) (including imputed ones) fall into non-coding regions, making it difficult to associate statistical significance with predicted functionality. Therefore, we created a web-based tool, Enlight, which overlays functional annotation information, such as histone modification states, methylation patterns, transcription factor binding sites, eQTL and higher-order chromosomal structure, to GWAS results.Accessible by a Web browser at http://enlight.usc.edu.

SUBMITTER: Guo Y 

PROVIDER: S-EPMC4287951 | biostudies-literature | 2015 Jan

REPOSITORIES: biostudies-literature

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Enlight: web-based integration of GWAS results with biological annotations.

Guo Yunfei Y   Conti David V DV   Wang Kai K  

Bioinformatics (Oxford, England) 20140926 2


<h4>Unlabelled</h4>Identifying causal variants remains a key challenge in post-GWAS (genome-wide association study) era, as many GWAS single-nucleotide polymorphisms (SNPs) (including imputed ones) fall into non-coding regions, making it difficult to associate statistical significance with predicted functionality. Therefore, we created a web-based tool, Enlight, which overlays functional annotation information, such as histone modification states, methylation patterns, transcription factor bindi  ...[more]

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