Genome wide analysis of Arabidopsis thaliana reveals high frequency of AAAGN7CTTT motif.
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ABSTRACT:
SUBMITTER: Mehrotra R
PROVIDER: S-EPMC4288566 | biostudies-literature | 2014 Dec
REPOSITORIES: biostudies-literature
Publications
Genome wide analysis of Arabidopsis thaliana reveals high frequency of AAAGN7CTTT motif.
Mehrotra Rajesh R Jain Vishesh V Shekhar Chandra C Mehrotra Sandhya S
Meta gene 20140829
Sequence specific elements in DNA regulate transcription by recruiting transcription factors. The Dof proteins are a large family of transcription factors that share a single highly conserved zinc finger. The core to which Dof proteins bind has a consensus AAAG or ACTTTA sequence. These motifs have been over represented in many promoters. We performed a genome wide analysis of AAAG repeat elements increasing the spacer length from 0 to 25. Similar analyses was done with AAAG-CTTT motifs. We repo ...[more]
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