16S classifier: a tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets.
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ABSTRACT:
SUBMITTER: Chaudhary N
PROVIDER: S-EPMC4315456 | biostudies-literature | 2015
REPOSITORIES: biostudies-literature
Publications
16S classifier: a tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets.
Chaudhary Nikhil N Sharma Ashok K AK Agarwal Piyush P Gupta Ankit A Sharma Vineet K VK
PloS one 20150203 2
The diversity of microbial species in a metagenomic study is commonly assessed using 16S rRNA gene sequencing. With the rapid developments in genome sequencing technologies, the focus has shifted towards the sequencing of hypervariable regions of 16S rRNA gene instead of full length gene sequencing. Therefore, 16S Classifier is developed using a machine learning method, Random Forest, for faster and accurate taxonomic classification of short hypervariable regions of 16S rRNA sequence. It display ...[more]
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