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A web interface for easy flexible protein-protein docking with ATTRACT.


ABSTRACT: Protein-protein docking programs can give valuable insights into the structure of protein complexes in the absence of an experimental complex structure. Web interfaces can facilitate the use of docking programs by structural biologists. Here, we present an easy web interface for protein-protein docking with the ATTRACT program. While aimed at nonexpert users, the web interface still covers a considerable range of docking applications. The web interface supports systematic rigid-body protein docking with the ATTRACT coarse-grained force field, as well as various kinds of protein flexibility. The execution of a docking protocol takes up to a few hours on a standard desktop computer.

SUBMITTER: de Vries SJ 

PROVIDER: S-EPMC4317529 | biostudies-literature | 2015 Feb

REPOSITORIES: biostudies-literature

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A web interface for easy flexible protein-protein docking with ATTRACT.

de Vries Sjoerd J SJ   Schindler Christina E M CE   Chauvot de Beauchêne Isaure I   Zacharias Martin M  

Biophysical journal 20150201 3


Protein-protein docking programs can give valuable insights into the structure of protein complexes in the absence of an experimental complex structure. Web interfaces can facilitate the use of docking programs by structural biologists. Here, we present an easy web interface for protein-protein docking with the ATTRACT program. While aimed at nonexpert users, the web interface still covers a considerable range of docking applications. The web interface supports systematic rigid-body protein dock  ...[more]

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