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Contribution of diet to the composition of the human gut microbiota.

ABSTRACT: In the human gut, millions of bacteria contribute to the microbiota, whose composition is specific for every individual. Although we are just at the very beginning of understanding the microbiota concept, we already know that the composition of the microbiota has a profound impact on human health. A key factor in determining gut microbiota composition is diet. Preliminary evidence suggests that dietary patterns are associated with distinct combinations of bacteria in the intestine, also called enterotypes. Western diets result in significantly different microbiota compositions than traditional diets. It is currently unknown which food constituents specifically promote growth and functionality of beneficial bacteria in the intestine. The aim of this review is to summarize the recently published evidence from human in vivo studies on the gut microbiota-modulating effects of diet. It includes sections on dietary patterns (e.g. Western diet), whole foods, food constituents, as wells as food-associated microbes and their influence on the composition of human gut microbiota. The conclusions highlight the problems faced by scientists in this fast-developing field of research, and the need for high-quality, large-scale human dietary intervention studies.

SUBMITTER: Graf D

PROVIDER: S-EPMC4318938 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Contribution of diet to the composition of the human gut microbiota.

Graf Daniela D Di Cagno Raffaella R Fåk Frida F Flint Harry J HJ Nyman Margareta M Saarela Maria M Watzl Bernhard B

Microbial ecology in health and disease 20150204

In the human gut, millions of bacteria contribute to the microbiota, whose composition is specific for every individual. Although we are just at the very beginning of understanding the microbiota concept, we already know that the composition of the microbiota has a profound impact on human health. A key factor in determining gut microbiota composition is diet. Preliminary evidence suggests that dietary patterns are associated with distinct combinations of bacteria in the intestine, also called e ...[more]

PMID: 25656825

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Project description:Abstract Objectives While it is known that specific components of diet namely fiber, fatty acids, or polyphenols can modulate the gut microbiota, literature describing the influence of a specific dietary pattern such as the Mediterranean Diet (MD) on enteric microbiota especially in relation to health are scarce. The aim of this study was to evaluate whether a MD intervention and the adherence to MD influences the gut fecal microbial composition in firefighters participating in Feeding America's Bravest, a randomized control trial. Methods Participants were firefighters who received a MD Nutritional Intervention (n = 22) or standard dietary advice (n = 24) as part of a cluster-randomized, controlled trial for 12 months. A lifestyle and food frequency questionnaire was administered and adherence scores to the MD were calculated (PREDIMED and Modified MD Score). Bacterial 16S rRNA sequencing was performed from fecal samples, and the microbial composition was analyzed with a bioinformatics pipeline implemented using QIIME 2. R software was used for linear modeling. Results The predominant bacteria phyla in both groups were Firmicutes (52.9%), Bacteroidetes (39.8%), Proteobacteria (3.5%), and Actinobacteria (2.0%). A significant increase in the genus Prevotella was found in those in the intervention group (1.45 log-fold, P = 0.018) compared to controls. Furthermore, linear modeling revealed that higher adherence to MD was associated with lower abundance of Lachnospiriceae UCG-010 (R2 = 0.205, P < 0.001) and Eubacterium ventriosum group (R2 = 0.101, P = 0.016). There were no significant differences in alpha or beta diversity between the control and intervention group. Conclusions A MD intervention as well as higher adherence influence gut microbiota composition; specifically, Prevotella, a genus previously associated with plant-rich diets, was significantly higher in the intervention group. Additionally, higher adherence to MD was associated with multiple genera of bacteria previously involved in SCFA production, which may help elucidate the beneficial effects of the Mediterranean Diet. Funding Sources Grant support: EMW-2014-FP-00612, US Department of Homeland Security and Ohio University Startup funds. Trial Registration Number: NCT02941757

Project description:The mammalian intestinal tract is heavily colonized with a dense, complex, and diversified microbial populations. In healthy individuals, an array of epithelial antimicrobial agents is secreted in the gut to aid intestinal homeostasis. Enterochromaffin cells (EC) in the intestinal epithelium are a major source of chromogranin A (CgA), which is a pro-hormone and can be cleaved into many bioactive peptides that include catestatin (CST). This study was carried out to evaluate the possible impact of CST on gut microbiota in vivo using a mouse model. The CST (Human CgA352-372) or normal saline was intrarectally administered in C57BL/6 male mice for 6 days and then sacrificed. Feces and colonic mucosa tissue samples were collected, DNA was extracted, the V4 region of bacterial 16S rRNA gene was amplified and subjected to MiSeq Illumina sequencing. The ?-diversity was calculated using Chao 1 and ?-diversity was determined using QIIME. Differences at the genus level were determined using partial least square discriminant analysis (PLS-DA). Phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) was used to predict functional capacity of bacterial community. CST treatment did not modify bacterial richness in fecal and colonic mucosa-associated microbiota; however, treatment significantly modified bacterial community composition between the groups. Also, CST-treated mice had a significantly lower relative abundance of Firmicutes and higher abundance of Bacteroidetes, observed only in fecal samples. However, at lower phylogenetic levels, PLS-DA analysis revealed that some bacterial taxa were significantly associated with the CST-treated mice in both fecal and colonic mucosa samples. In addition, differences in predicted microbial functional pathways in both fecal and colonic mucosa samples were detected. The results support the hypothesis that CST treatment modulates gut microbiota composition under non-pathophysiological conditions, however, the result of this study needs to be further validated in a larger experiment. The data may open new avenues for the development of a potential new line of antimicrobial peptides and their use as therapeutic agents to treat several inflammatory conditions of the gastrointestinal tract, such as inflammatory bowel disease (IBD), inflammatory bowel syndrome (IBS), or other health conditions.

Project description:Fully understanding the dynamic distribution of the gut microbiota in pigs is essential, as gut microorganisms play a fundamental role in physiological processes, immunity, and the metabolism of nutrients by the host. Here, we first summarize the characteristics and the dynamic shifts in the gut microbial community of pigs at different ages based on the results of 63 peer-review publications. Then a meta-analysis based on the sequences from 16 studies with accession numbers in the GenBank database is conducted to verify the characteristics of the gut microbiota in healthy pigs. A dynamic shift is confirmed in the gut microbiota of pigs at different ages and growth phases. In general, Bacteroides, Escherichia, Clostridium, Lactobacillus, Fusobacterium, and Prevotella are dominant in piglets before weaning, then Prevotella and Aneriacter shift to be the predominant genera with Fusobacterium, Lactobacillus, and Miscellaneous as comparative minors in postweaned pigs. A number of 19 bacterial genera, including Bacteroides, Prevotella, and Lactobacillus can be found in more than 90% of pigs and three enterotypes can be identified in all pigs at different ages, suggesting there is a "core" microbiota in the gut of healthy pigs, which can be a potential target for nutrition or health regulation. The "core" members benefit the growth and gut health of the host. These findings help to define an "optimal" gut microbial profile for assessing, or improving, the performance and health status of pigs at different growth stages. IMPORTANCE The ban on feed antibiotics by more and more countries, and the expected ban on ZnO in feed supplementation from 2022 in the EU, urge researchers and pig producers to search for new alternatives. One possible alternative is to use the so-called "next-generation probiotics (NGPs)" derived from gastrointestinal tract. In this paper, we reveal that a total of 19 "core" bacterial genera including Bacteroides, Prevotella, and Lactobacillus etc., can be found in more than 90% of healthy pigs across different ages. These identified genera may probably be the potential candidates of NGPs or the potential target of microflora regulation. Adding substrates preferred by these target microbes will help to increase the abundance of specific symbiotic species and benefit the gut health of pigs. Further research targeting these "core" microbes and the dynamic distribution of microbiota, as well as the related function is of great importance in swine production.

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Contribution of diet to the composition of the human gut microbiota.

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Contribution of diet to the composition of the human gut microbiota.

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