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TLR4/NF-?B-responsive microRNAs and their potential target genes: a mouse model of skeletal muscle ischemia-reperfusion injury.


ABSTRACT: The aim of this study was to profile TLR4/NF-?B-responsive microRNAs (miRNAs) and their potential target genes in the skeletal muscles of mice following ischemia-reperfusion injury.Thigh skeletal muscles of C57BL/6, Tlr4(-/-), and NF-?B(-/-) mice isolated based on femoral artery perfusion were subjected to ischemia for 2?h and reperfusion for 0?h, 4?h, 1?d, and 7?d. The muscle specimens were analyzed with miRNA arrays. Immunoprecipitation with an argonaute 2- (Ago2-) specific monoclonal antibody followed by whole genome microarray was performed to identify mRNA associated with the RNA-silencing machinery. The potential targets of each upregulated miRNA were identified by combined analysis involving the bioinformatics algorithm miRanda and whole genome expression.Three TLR4/NF-?B-responsive miRNAs (miR-15a, miR-744, and miR-1196) were significantly upregulated in the muscles following ischemia-reperfusion injury. The combined in silico and whole genome microarray approaches identified 5, 4, and 20 potential target genes for miR-15a, miR-744, and miR-1196, respectively. Among the 3 genes (Zbed4, Lrsam1, and Ddx21) regulated by at least 2 of the 3 upregulated miRNAs, Lrsam1 and Ddx21 are known to be associated with the innate immunity pathway.This study profiled TLR4/NF-?B-responsive miRNAs and their potential target genes in mouse skeletal muscle subjected to ischemia-reperfusion injury.

SUBMITTER: Yang JC 

PROVIDER: S-EPMC4321099 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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TLR4/NF-κB-responsive microRNAs and their potential target genes: a mouse model of skeletal muscle ischemia-reperfusion injury.

Yang Johnson Chia-Shen JC   Wu Shao-Chun SC   Rau Cheng-Shyuan CS   Chen Yi-Chun YC   Lu Tsu-Hsiang TH   Wu Yi-Chan YC   Tzeng Siou-Ling SL   Wu Chia-Jung CJ   Hsieh Ching-Hua CH  

BioMed research international 20150126


<h4>Background</h4>The aim of this study was to profile TLR4/NF-κB-responsive microRNAs (miRNAs) and their potential target genes in the skeletal muscles of mice following ischemia-reperfusion injury.<h4>Methods</h4>Thigh skeletal muscles of C57BL/6, Tlr4(-/-), and NF-κB(-/-) mice isolated based on femoral artery perfusion were subjected to ischemia for 2 h and reperfusion for 0 h, 4 h, 1 d, and 7 d. The muscle specimens were analyzed with miRNA arrays. Immunoprecipitation with an argonaute 2- (  ...[more]

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