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A solution to the fabrication and tarnishing problems of surface-enhanced Raman spectroscopy (SERS) fiber probes.

ABSTRACT: Surface enhanced Raman scattering (SERS) fiber probes have enormous potential in optical sensing applications. However, their widespread use has been hindered by two major obstacles: the difficulty of fabricating the required silver nanostructures on optical fibers and the tarnishing of silver, rapidly degrading their sensing properties. Here we propose a solution to these dilemmas by abandoning the use of metallic silver and conventional nanofabrication procedures. Instead, we base our fabrication on chemically stable silver chloride and show that it can be directly grown on the optical fibers without any advanced fabrication equipment. As silver chloride itself is not SERS-active, we demonstrate how to "activate" the probes by turning the crystals into metallic silver nanostructures via photoreduction. We verify that if stored in the non-activated stage, the sensing properties of the structures remain unchanged. Finally, we demonstrate the high sensitivity (signal-to-noise ratio up to 42 ± 3?dB) of the probes in real-time in situ measurements at nanomolar analyte concentrations.

SUBMITTER: Matikainen A

PROVIDER: S-EPMC4321172 | biostudies-literature | 2015 Feb

REPOSITORIES: biostudies-literature

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A solution to the fabrication and tarnishing problems of surface-enhanced Raman spectroscopy (SERS) fiber probes.

Matikainen Antti A Nuutinen Tarmo T Vahimaa Pasi P Honkanen Seppo S

Scientific reports 20150209

Surface enhanced Raman scattering (SERS) fiber probes have enormous potential in optical sensing applications. However, their widespread use has been hindered by two major obstacles: the difficulty of fabricating the required silver nanostructures on optical fibers and the tarnishing of silver, rapidly degrading their sensing properties. Here we propose a solution to these dilemmas by abandoning the use of metallic silver and conventional nanofabrication procedures. Instead, we base our fabricat ...[more]

PMID: 25662157

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Project description:Gene promoter hypermethylation is a vital step in tumorigenesis. This paper set out to explore the use of polymerase chain reaction - surface-enhanced Raman spectroscopy (PCR-SERS) for the detection of gene methylation levels, with a focus on cancer diagnosis. Methods: PCR with methylation independent primers were used on DNA samples to amplify target genes regardless of their methylation states. SERS was used on the obtained PCR products to generate spectra that contained peak changes belonging to CG and AT base pairs. Multiple linear regression (MLR) was then used to deconvolute the SERS spectra so that the CG/AT ratios of the sample could be obtained. These MLR results were used to calculate methylation levels of the target genes. For protocol verification, three sets of seven reference DNA solutions with known methylation levels (0%, 1%, 5%, 25%, 50%, 75%, and 100%) were analysed. Clinically, blood plasma samples were taken from 48 non-small-cell lung cancer (NSCLC) patients and 51 healthy controls. The methylation levels of the genes p16, MGMT, and RASSF1 were determined for each patient using this method. Results: Verification experiment on the mixtures with known methylation levels resulted in an error of less than 6% from the actual levels. When applied to our clinical samples, the frequency of methylation in at least one of the three target genes among the NSCLC patients was 87.5%, but this percentage decreased to 11.8% for the control group. The methylation levels of p16 were found to be significantly higher in NSCLC patients with more pack-years smoked (p=0.04), later cancer stages (p=0.03), and cancer types of squamous cell and large cell versus adenocarcinoma (p=0.03). Prediction accuracy of 88% was achieved from classification and regression trees (CART) based on methylation levels and states, respectively. Conclusion: This research showed that the PCR-SERS protocol could quantitatively measure the methylation levels of genes in plasma. The methylation levels of the genes p16, MGMT, and RASSF1 were higher in NSCLC patients than in controls.

Dataset Information

A solution to the fabrication and tarnishing problems of surface-enhanced Raman spectroscopy (SERS) fiber probes.

Publications

A solution to the fabrication and tarnishing problems of surface-enhanced Raman spectroscopy (SERS) fiber probes.

Similar Datasets

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