Ontology highlight
ABSTRACT:
SUBMITTER: Lin MT
PROVIDER: S-EPMC4332779 | biostudies-literature | 2014 Jun
REPOSITORIES: biostudies-literature
Lin Ming-Tseh MT Mosier Stacy L SL Thiess Michele M Beierl Katie F KF Debeljak Marija M Tseng Li-Hui LH Chen Guoli G Yegnasubramanian Srinivasan S Ho Hao H Cope Leslie L Wheelan Sarah J SJ Gocke Christopher D CD Eshleman James R JR
American journal of clinical pathology 20140601 6
<h4>Objectives</h4>To validate next-generation sequencing (NGS) technology for clinical diagnosis and to determine appropriate read depth.<h4>Methods</h4>We validated the KRAS, BRAF, and EGFR genes within the Ion AmpliSeq Cancer Hotspot Panel using the Ion Torrent Personal Genome Machine (Life Technologies, Carlsbad, CA).<h4>Results</h4>We developed a statistical model to determine the read depth needed for a given percent tumor cellularity and number of functional genomes. Bottlenecking can res ...[more]