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Overlapping local and long-range RNA-RNA interactions modulate dengue virus genome cyclization and replication.


ABSTRACT: The dengue virus genome is a dynamic molecule that adopts different conformations in the infected cell. Here, using RNA folding predictions, chemical probing analysis, RNA binding assays, and functional studies, we identified new cis-acting elements present in the capsid coding sequence that facilitate cyclization of the viral RNA by hybridization with a sequence involved in a local dumbbell structure at the viral 3' untranslated region (UTR). The identified interaction differentially enhances viral replication in mosquito and mammalian cells.

SUBMITTER: de Borba L 

PROVIDER: S-EPMC4337542 | biostudies-literature | 2015 Mar

REPOSITORIES: biostudies-literature

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Overlapping local and long-range RNA-RNA interactions modulate dengue virus genome cyclization and replication.

de Borba Luana L   Villordo Sergio M SM   Iglesias Nestor G NG   Filomatori Claudia V CV   Gebhard Leopoldo G LG   Gamarnik Andrea V AV  

Journal of virology 20150114 6


The dengue virus genome is a dynamic molecule that adopts different conformations in the infected cell. Here, using RNA folding predictions, chemical probing analysis, RNA binding assays, and functional studies, we identified new cis-acting elements present in the capsid coding sequence that facilitate cyclization of the viral RNA by hybridization with a sequence involved in a local dumbbell structure at the viral 3' untranslated region (UTR). The identified interaction differentially enhances v  ...[more]

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