Dataset Information

Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities.

ABSTRACT: Plant roots are known to harbor large and diverse communities of bacteria. It has been suggested that plant identity can structure these root-associated communities, but few studies have specifically assessed how the composition of root microbiota varies within and between plant species growing under natural conditions. We assessed the community composition of endophytic and epiphytic bacteria through high throughput sequencing using 16S rDNA derived from root tissues collected from a population of a wild, clonal plant (Orange hawkweed-Pilosella aurantiaca) as well as two neighboring plant species (Oxeye daisy-Leucanthemum vulgare and Alsike clover-Trifolium hybridum). Our first goal was to determine if plant species growing in close proximity, under similar environmental conditions, still hosted unique root microbiota. Our results showed that plants of different species host distinct bacterial communities in their roots. In terms of community composition, Betaproteobacteria (especially the family Oxalobacteraceae) were found to dominate in the root microbiota of L. vulgare and T. hybridum samples, whereas the root microbiota of P. aurantiaca had a more heterogeneous distribution of bacterial abundances where Gammaproteobacteria and Acidobacteria occupied a larger portion of the community. We also explored the extent of individual variance within each plant species investigated, and found that in the plant species thought to have the least genetic variance among individuals (P. aurantiaca) still hosted just as diverse microbial communities. Whether all plant species host their own distinct root microbiota and plants more closely related to each other share more similar bacterial communities still remains to be fully explored, but among the plants examined in this experiment there was no trend that the two species belonging to the same family shared more similarities in terms of bacterial community composition.

SUBMITTER: Aleklett K

PROVIDER: S-EPMC4349149 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities.

Aleklett Kristin K Leff Jonathan W JW Fierer Noah N Hart Miranda M

PeerJ 20150226

Plant roots are known to harbor large and diverse communities of bacteria. It has been suggested that plant identity can structure these root-associated communities, but few studies have specifically assessed how the composition of root microbiota varies within and between plant species growing under natural conditions. We assessed the community composition of endophytic and epiphytic bacteria through high throughput sequencing using 16S rDNA derived from root tissues collected from a population ...[more]

PMID: 25755932

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Project description:Domestic livestock grazing has caused dramatic changes in plant community composition across the globe. However, the response of plant species abundance in communities subject to grazing has not often been investigated through a functional lens, especially for belowground traits. Grazing directly impacts aboveground plant tissues, but the relationships between above- and belowground traits, and their influence on species abundance are also not well known. We collected plant trait and species relative abundance data in the grazed and nongrazed meadow plant communities in a species-rich subalpine ecosystem of the Qinghai-Tibet Plateau. We measured three aboveground traits (leaf photosynthesis rate, specific leaf area, and maximum height) and five belowground traits (root average diameter, root biomass, specific root length, root tissue density, and specific root area). We tested for shifts in the relationship between species relative abundance and among all measured traits under grazing compared with the nongrazed meadow. We also compared the power of above- and belowground traits to predict species relative abundance. We observed a significant shift from a resource conservation strategy to a resource acquisition strategy. Moreover, this resource conservation versus resource acquisition trade-off can also determine species relative abundance in the grazed and nongrazed plant communities. Specifically, abundant species in the nongrazed meadow had aboveground and belowground traits that are associated with high resource conservation, whereas aboveground and belowground traits that are correlated with high resource acquisition determined species relative abundance in the grazed meadow. However, belowground traits were found to explain more variances in species relative abundance than aboveground traits in the nongrazed meadow, while aboveground and belowground traits had comparable predictive power in the grazed meadow. We show that species relative abundance in both the grazed and the nongrazed meadows can be predicted by both aboveground traits and belowground traits associated with a resource acquisition versus conservation trade-off. More importantly, we show that belowground traits have higher predictive power of species relative abundance than aboveground traits in the nongrazed meadow, whereas in the grazed meadows, above- and belowground traits had comparable high predictive power.

Project description:BackgroundUnderstanding the underlying factors that determine the relative abundance of plant species is critical to predict both biodiversity and ecosystem function. Biotic and abiotic factors can shape the distribution and the relative abundance of species across natural communities, greatly influencing local biodiversity.MethodsUsing a combination of an observational study and a five-year plant removal experiment we: (1) documented how plant diversity and composition of montane meadow assemblages vary along a plant dominance gradient using an observational study; (2) tracked above- and belowground functional traits of co-dominant plant species Potentilla and Festuca along a plant dominance gradient in an observational study; (3) determined whether plant species diversity and composition was directly influenced by commonly occurring species Potentilla and Festuca with the use of a randomized plot design, 5-year plant removal experiment (no removal control, Potentilla removed, Festuca removed, n = 10).ResultsWe found that subordinate species diversity and compositional dissimilarity were greatest in Potentilla and Festuca co-dominated sites, where neither Potentilla nor Festuca dominated, rather than at sites where either species became dominant. Further, while above- and belowground plant functional traits varied along a dominance gradient, they did so in a way that inconsistently predicted plant species relative abundance. Also, neither variation in plant functional traits of Festuca and Potentilla nor variation in resources and conditions (such as soil nitrogen and temperature) explained our subordinate diversity patterns. Finally, neither Potentilla nor Festuca influenced subordinate diversity or composition when we directly tested for their impacts in a plant removal experiment.DiscussionTaken together, patterns of subordinate diversity and composition were likely driven by abiotic factors rather than biotic interactions. As a result, the role of abiotic factors influencing local-level species interactions can be just as important as biotic interactions themselves in structuring plant communities.

Dataset Information

Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities.

Publications

Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities.

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