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Specific ion effects on macromolecular interactions in Escherichia coli extracts.


ABSTRACT: Protein characterization in situ remains a major challenge for protein science. Here, the interactions of ?Tat-GB1 in Escherichia coli cell extracts were investigated by NMR spectroscopy and size exclusion chromatography (SEC). ?Tat-GB1 was found to participate in high molecular weight complexes that remain intact at physiologically-relevant ionic strength. This observation helps to explain why ?Tat-GB1 was not detected by in-cell NMR spectroscopy. Extracts pre-treated with RNase A had a different SEC elution profile indicating that ?Tat-GB1 predominantly interacted with RNA. The roles of biological and laboratory ions in mediating macromolecular interactions were studied. Interestingly, the interactions of ?Tat-GB1 could be disrupted by biologically-relevant multivalent ions. The most effective shielding of interactions occurred in Mg(2+) -containing buffers. Moreover, a combination of RNA digestion and Mg(2+) greatly enhanced the NMR detection of ?Tat-GB1 in cell extracts.

SUBMITTER: Kyne C 

PROVIDER: S-EPMC4353357 | biostudies-literature | 2015 Mar

REPOSITORIES: biostudies-literature

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Specific ion effects on macromolecular interactions in Escherichia coli extracts.

Kyne Ciara C   Ruhle Brian B   Gautier Virginie W VW   Crowley Peter B PB  

Protein science : a publication of the Protein Society 20141230 3


Protein characterization in situ remains a major challenge for protein science. Here, the interactions of ΔTat-GB1 in Escherichia coli cell extracts were investigated by NMR spectroscopy and size exclusion chromatography (SEC). ΔTat-GB1 was found to participate in high molecular weight complexes that remain intact at physiologically-relevant ionic strength. This observation helps to explain why ΔTat-GB1 was not detected by in-cell NMR spectroscopy. Extracts pre-treated with RNase A had a differe  ...[more]

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