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Sparse modeling of spatial environmental variables associated with asthma.

ABSTRACT: Geographically distributed environmental factors influence the burden of diseases such as asthma. Our objective was to identify sparse environmental variables associated with asthma diagnosis gathered from a large electronic health record (EHR) dataset while controlling for spatial variation. An EHR dataset from the University of Wisconsin's Family Medicine, Internal Medicine and Pediatrics Departments was obtained for 199,220 patients aged 5-50years over a three-year period. Each patient's home address was geocoded to one of 3456 geographic census block groups. Over one thousand block group variables were obtained from a commercial database. We developed a Sparse Spatial Environmental Analysis (SASEA). Using this method, the environmental variables were first dimensionally reduced with sparse principal component analysis. Logistic thin plate regression spline modeling was then used to identify block group variables associated with asthma from sparse principal components. The addresses of patients from the EHR dataset were distributed throughout the majority of Wisconsin's geography. Logistic thin plate regression spline modeling captured spatial variation of asthma. Four sparse principal components identified via model selection consisted of food at home, dog ownership, household size, and disposable income variables. In rural areas, dog ownership and renter occupied housing units from significant sparse principal components were associated with asthma. Our main contribution is the incorporation of sparsity in spatial modeling. SASEA sequentially added sparse principal components to Logistic thin plate regression spline modeling. This method allowed association of geographically distributed environmental factors with asthma using EHR and environmental datasets. SASEA can be applied to other diseases with environmental risk factors.

SUBMITTER: Chang TS

PROVIDER: S-EPMC4355087 | biostudies-literature | 2015 Feb

REPOSITORIES: biostudies-literature

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Sparse modeling of spatial environmental variables associated with asthma.

Chang Timothy S TS Gangnon Ronald E RE David Page C C Buckingham William R WR Tandias Aman A Cowan Kelly J KJ Tomasallo Carrie D CD Arndt Brian G BG Hanrahan Lawrence P LP Guilbert Theresa W TW

Journal of biomedical informatics 20141220

Geographically distributed environmental factors influence the burden of diseases such as asthma. Our objective was to identify sparse environmental variables associated with asthma diagnosis gathered from a large electronic health record (EHR) dataset while controlling for spatial variation. An EHR dataset from the University of Wisconsin's Family Medicine, Internal Medicine and Pediatrics Departments was obtained for 199,220 patients aged 5-50years over a three-year period. Each patient's home ...[more]

PMID: 25533437

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Sparse modeling of spatial environmental variables associated with asthma.

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Sparse modeling of spatial environmental variables associated with asthma.

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