Dataset Information

GlycoRDF: an ontology to standardize glycomics data in RDF.

ABSTRACT:

Motivation

Over the last decades several glycomics-based bioinformatics resources and databases have been created and released to the public. Unfortunately, there is no common standard in the representation of the stored information or a common machine-readable interface allowing bioinformatics groups to easily extract and cross-reference the stored information.

Results

An international group of bioinformatics experts in the field of glycomics have worked together to create a standard Resource Description Framework (RDF) representation for glycomics data, focused on glycan sequences and related biological source, publications and experimental data. This RDF standard is defined by the GlycoRDF ontology and will be used by database providers to generate common machine-readable exports of the data stored in their databases.

Availability and implementation

The ontology, supporting documentation and source code used by database providers to generate standardized RDF are available online (http://www.glycoinfo.org/GlycoRDF/).

SUBMITTER: Ranzinger R

PROVIDER: S-EPMC4380026 | biostudies-literature | 2015 Mar

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

GlycoRDF: an ontology to standardize glycomics data in RDF.

Ranzinger Rene R Aoki-Kinoshita Kiyoko F KF Campbell Matthew P MP Kawano Shin S Lütteke Thomas T Okuda Shujiro S Shinmachi Daisuke D Shikanai Toshihide T Sawaki Hiromichi H Toukach Philip P Matsubara Masaaki M Yamada Issaku I Narimatsu Hisashi H

Bioinformatics (Oxford, England) 20141111 6

<h4>Motivation</h4>Over the last decades several glycomics-based bioinformatics resources and databases have been created and released to the public. Unfortunately, there is no common standard in the representation of the stored information or a common machine-readable interface allowing bioinformatics groups to easily extract and cross-reference the stored information.<h4>Results</h4>An international group of bioinformatics experts in the field of glycomics have worked together to create a stan ...[more]

PMID: 25388145

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Dataset Information

GlycoRDF: an ontology to standardize glycomics data in RDF.

Motivation

Results

Availability and implementation

Publications

GlycoRDF: an ontology to standardize glycomics data in RDF.

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