GcoGSA-BA: a global core genome SNP analysis for Bacillus anthracis.
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ABSTRACT:
SUBMITTER: Yamashita A
PROVIDER: S-EPMC4389694 | biostudies-literature | 2015 Jan-Feb
REPOSITORIES: biostudies-literature
Publications
GcoGSA-BA: a global core genome SNP analysis for Bacillus anthracis.
Yamashita Akifmi A Sekizuka Tsuyoshi T Kuroda Makoto M
Health security 20150128 1
As an issue of biosecurity, it is important to identify the origin of a suspected sample to distinguish whether it originated from the release of a bioterrorism agent or from environmental contamination with a virulent agent. Here we have developed an analytical pipeline that can infer the phylogenetic position of Bacillus cereus group species, including B. anthracis, from next-generation sequencing reads without extensive genomics skills. GcoGSA-BA can also detect the existence of anthrax plasm ...[more]
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