Riboswitch finder--a tool for identification of riboswitch RNAs.
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ABSTRACT:
SUBMITTER: Bengert P
PROVIDER: S-EPMC441490 | biostudies-literature | 2004 Jul
REPOSITORIES: biostudies-literature
Publications
Riboswitch finder--a tool for identification of riboswitch RNAs.
Bengert Peter P Dandekar Thomas T
Nucleic acids research 20040701 Web Server issue
We describe a dedicated RNA motif search program and web server to identify RNA riboswitches. The Riboswitch finder analyses a given sequence using the web interface, checks specific sequence elements and secondary structure, calculates and displays the energy folding of the RNA structure and runs a number of tests including this information to determine whether high-sensitivity riboswitch motifs (or variants) according to the Bacillus subtilis type are present in the given RNA sequence. Batch-m ...[more]
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