Ontology highlight
ABSTRACT:
SUBMITTER: Haberle V
PROVIDER: S-EPMC4417143 | biostudies-literature | 2015 Apr
REPOSITORIES: biostudies-literature
Haberle Vanja V Forrest Alistair R R AR Hayashizaki Yoshihide Y Carninci Piero P Lenhard Boris B
Nucleic acids research 20150204 8
Cap analysis of gene expression (CAGE) is a high-throughput method for transcriptome analysis that provides a single base-pair resolution map of transcription start sites (TSS) and their relative usage. Despite their high resolution and functional significance, published CAGE data are still underused in promoter analysis due to the absence of tools that enable its efficient manipulation and integration with other genome data types. Here we present CAGEr, an R implementation of novel methods for ...[more]