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Automatic morphological characterization of nanobubbles with a novel image segmentation method and its application in the study of nanobubble coalescence.

ABSTRACT: Nanobubbles (NBs) on hydrophobic surfaces in aqueous solvents have shown great potential in numerous applications. In this study, the morphological characterization of NBs in AFM images was carried out with the assistance of a novel image segmentation method. The method combines the classical threshold method and a modified, active contour method to achieve optimized image segmentation. The image segmentation results obtained with the classical threshold method and the proposed, modified method were compared. With the modified method, the diameter, contact angle, and radius of curvature were automatically measured for all NBs in AFM images. The influence of the selection of the threshold value on the segmentation result was discussed. Moreover, the morphological change in the NBs was studied in terms of density, covered area, and volume occurring during coalescence under external disturbance.

SUBMITTER: Wang Y

PROVIDER: S-EPMC4419579 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Automatic morphological characterization of nanobubbles with a novel image segmentation method and its application in the study of nanobubble coalescence.

Wang Yuliang Y Wang Huimin H Bi Shusheng S Guo Bin B

Beilstein journal of nanotechnology 20150414

Nanobubbles (NBs) on hydrophobic surfaces in aqueous solvents have shown great potential in numerous applications. In this study, the morphological characterization of NBs in AFM images was carried out with the assistance of a novel image segmentation method. The method combines the classical threshold method and a modified, active contour method to achieve optimized image segmentation. The image segmentation results obtained with the classical threshold method and the proposed, modified method ...[more]

PMID: 25977866

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Project description:PurposeManually tracing regions of interest (ROIs) within the liver is the de facto standard method for measuring liver attenuation on computed tomography (CT) in diagnosing nonalcoholic fatty liver disease (NAFLD). However, manual tracing is resource intensive. To address these limitations and to expand the availability of a quantitative CT measure of hepatic steatosis, we propose the automatic liver attenuation ROI-based measurement (ALARM) method for automated liver attenuation estimation.MethodsThe ALARM method consists of two major stages: (a) deep convolutional neural network (DCNN)-based liver segmentation and (b) automated ROI extraction. First, liver segmentation was achieved using our previously developed SS-Net. Then, a single central ROI (center-ROI) and three circles ROI (periphery-ROI) were computed based on liver segmentation and morphological operations. The ALARM method is available as an open source Docker container (https://github.com/MASILab/ALARM).ResultsTwo hundred and forty-six subjects with 738 abdomen CT scans from the African American-Diabetes Heart Study (AA-DHS) were used for external validation (testing), independent from the training and validation cohort (100 clinically acquired CT abdominal scans). From the correlation analyses, the proposed ALARM method achieved Pearson correlations = 0.94 with manual estimation on liver attenuation estimations. When evaluating the ALARM method for detection of nonalcoholic fatty liver disease (NAFLD) using the traditional cut point of < 40 HU, the center-ROI achieved substantial agreements (Kappa = 0.79) with manual estimation, while the periphery-ROI method achieved "excellent" agreement (Kappa = 0.88) with manual estimation. The automated ALARM method had reduced variability compared to manual measurements as indicated by a smaller standard deviation.ConclusionsWe propose a fully automated liver attenuation estimation method termed ALARM by combining DCNN and morphological operations, which achieved "excellent" agreement with manual estimation for fatty liver detection. The entire pipeline is implemented as a Docker container which enables users to achieve liver attenuation estimation in five minutes per CT exam.

Dataset Information

Automatic morphological characterization of nanobubbles with a novel image segmentation method and its application in the study of nanobubble coalescence.

Publications

Automatic morphological characterization of nanobubbles with a novel image segmentation method and its application in the study of nanobubble coalescence.

Similar Datasets

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