Browse
Submit Data
Databases
API
Help

Dataset Information

14 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome Sequence of Mycobacteriophage Mindy.

ABSTRACT: Mycobacteriophage Mindy is a newly isolated phage of Mycobacterium smegmatis, recovered from a soil sample in Pittsburgh, Pennsylvania, USA. Mindy has a genome length of 75,796 bp, encodes 147 predicted proteins and two tRNAs, and is closely related to mycobacteriophages in cluster E.

SUBMITTER: Pope WH

PROVIDER: S-EPMC4472888 | biostudies-literature | 2015 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Genome Sequence of Mycobacteriophage Mindy.

Pope Welkin H WH Bernstein Nicholas I NI Fasolas Christina S CS Mezghani Nadia N Pressimone Catherine A CA Selvakumar Priyanga P Stanton Ann-Catherine J AC Lapin Jonathan S JS Prout Ashley K AK Grubb Sarah R SR Warner Marcie H MH Bowman Charles A CA Russell Daniel A DA Hatfull Graham F GF

Genome announcements 20150618 3

Mycobacteriophage Mindy is a newly isolated phage of Mycobacterium smegmatis, recovered from a soil sample in Pittsburgh, Pennsylvania, USA. Mindy has a genome length of 75,796 bp, encodes 147 predicted proteins and two tRNAs, and is closely related to mycobacteriophages in cluster E. ...[more]

PMID: 26089411

Similar Datasets

Genome Sequence of Mycobacteriophage ErnieJ.

Project description:ErnieJ, a cluster C mycobacteriophage that infects Mycobacterium smegmatis mc2155, was recovered from soil in Washington, DC. Its genome is 153,243 bp in size and encodes 227 predicted proteins, 30 tRNAs, and one transfer-messenger RNA (tmRNA). Ten percent of the predicted proteins have homologs in phages that infect nonmycobacterial Actinobacteria.

| S-EPMC5122674 | biostudies-literature

Genome Sequence of Mycobacteriophage Phayonce.

Project description:Mycobacteriophage Phayonce is a newly isolated phage recovered from a soil sample in Pittsburgh, PA, using Mycobacterium smegmatis mc(2)155 as a host. Phayonce's genome is 49,203 bp long and contains 77 protein-coding genes, 23 of them having predicted functions. Phayonce shares a strong similarity in nucleotide sequence with phages of cluster P.

| S-EPMC4472890 | biostudies-literature

Genome Sequence of Mycobacteriophage Momo.

Project description:Momo is a newly discovered phage of Mycobacterium smegmatis mc(2)155. Momo has a double-stranded DNA genome 154,553 bp in length, with 233 predicted protein-encoding genes, 34 tRNA genes, and one transfer-messenger RNA (tmRNA) gene. Momo has a myoviral morphology and shares extensive nucleotide sequence similarity with subcluster C1 mycobacteriophages.

| S-EPMC4472892 | biostudies-literature

Genome Sequence of Mycobacteriophage Cabrinians.

Project description:Mycobacteriophage Cabrinians is a newly isolated phage capable of infecting both Mycobacterium phlei and Mycobacterium smegmatis and was recovered from a soil sample in New York City, NY. Cabrinians has a genome length of 56,669 bp, encodes 101 predicted proteins, and is a member of mycobacteriophages in cluster F.

| S-EPMC4742673 | biostudies-literature

Complete Genome Sequence of Mycobacteriophage Fulbright.

Project description:Mycobacteriophage Fulbright was isolated from soil in central Oklahoma using Mycobacterium smegmatis mc2115. The genome of phage Fulbright is 42,396 bp long and contains 70 open reading frames (ORFs), with 33 having predicted functions and 37 having hypothetical proteins. It belongs to cluster N and shares 99% nucleotide identity with mycobacteriophage Phloss.

| S-EPMC7975880 | biostudies-literature

Complete Genome Sequence of Mycobacteriophage Joy99.

Project description:Joy99 is a siphoviral mycobacteriophage with a 59,837-base pair double-stranded DNA genome and is predicted to contain 97 protein-coding genes and a single tRNA gene. Joy99 was isolated in Saint Louis, MO, and annotated by students at Bluff Dale High School in community engagement with Tarleton State University.

| S-EPMC8359790 | biostudies-literature

Complete Genome Sequence of Mycobacteriophage Faze9.

Project description:Mycobacteriophage Faze9 is a novel lytic phage that was isolated from soil collected in Scranton, PA, using the host Mycobacterium smegmatis mc2155. Faze9 has a double-stranded DNA genome composed of 67,503 kbp, has a G+C content of 68.9%, encodes 91 predicted proteins, and is closely related to mycobacteriophages in the B2 subcluster. .

| S-EPMC6965579 | biostudies-literature

Genome Sequence of Cluster W Mycobacteriophage Taptic.

Project description:The Taptic genome is the first to be annotated from the W cluster of mycobacteriophages infecting Mycobacterium smegmatis mc2155. All 92 predicted open reading frames (ORFs) and a single tRNA specifying glycine (tRNA-gly) are transcribed rightward. Many functionally uncharacterized ORFs appear to be W cluster specific, as nucleotide similarity is shared only with other W cluster genomes.

| S-EPMC5356062 | biostudies-literature

Genome Sequence of a Newly Isolated Mycobacteriophage, ShedlockHolmes.

Project description:Mycobacteriophage ShedlockHolmes is a newly isolated phage infecting Mycobacterium smegmatis mc(2)155. It has a 61,081-bp genome containing 99 predicted protein-coding genes and one tRNA gene. ShedlockHolmes is closely related to mycobacteriophages Pixie, Keshu, and MacnCheese and is a new member of subcluster K3.

| S-EPMC4472889 | biostudies-literature

Characterization and Genome Sequence of the Mycobacteriophage Donny.

Project description:We report the discovery of the novel bacteriophage Donny, a Siphoviridae virus that infects Mycobacterium smegmatis mc2155. Donny has a genome length of 69,691 bp and a G+C content of 68.5%. Donny shares 99% and 93% nucleotide identity with bacteriophages Acadian and Baee, respectively.

| S-EPMC7378026 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data