Dataset Information

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.

ABSTRACT: Prymnesium parvum is a globally distributed prymnesiophyte alga commonly found in brackish water marine ecosystems and lakes. It possesses a suite of toxins with ichthyotoxic, cytotoxic and hemolytic effects which, along with its mixotrophic nutritional capabilities, allows it to form massive Ecosystem Disruptive Algal Blooms (EDABs). While blooms of high abundance coincide with high levels of nitrogen (N) and phosphorus (P), reports of field and laboratory studies have noted that P. parvum toxicity appears to be augmented at high N:P ratios or P-limiting conditions. Here we present the results of a comparative analysis of P. parvum RNA-Seq transcriptomes under nutrient replete conditions, and N or P deficiency to understand how this organism responds at the transcriptional level to varying nutrient conditions. In nutrient limited conditions we found diverse transcriptional responses for genes involved in nutrient uptake, protein synthesis and degradation, photosynthesis, and toxin production. As anticipated, when either N or P was limiting, transcription levels of genes encoding transporters for the respective nutrient were higher than those under replete condition. Ribosomal and lysosomal protein genes were expressed at higher levels under either nutrient-limited condition compared to the replete condition. Photosynthesis genes and polyketide synthase genes were more highly expressed under P-limitation but not under N-limitation. These results highlight the ability of P. parvum to mount a coordinated and varied cellular and physiological response to nutrient limitation. Results also provide potential marker genes for further evaluating the physiological response and toxin production of P. parvum populations during bloom formation or to changing environmental conditions.

SUBMITTER: Liu Z

PROVIDER: S-EPMC4478897 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.

Liu Zhenfeng Z Koid Amy E AE Terrado Ramon R Campbell Victoria V Caron David A DA Heidelberg Karla B KB

Frontiers in microbiology 20150624

Prymnesium parvum is a globally distributed prymnesiophyte alga commonly found in brackish water marine ecosystems and lakes. It possesses a suite of toxins with ichthyotoxic, cytotoxic and hemolytic effects which, along with its mixotrophic nutritional capabilities, allows it to form massive Ecosystem Disruptive Algal Blooms (EDABs). While blooms of high abundance coincide with high levels of nitrogen (N) and phosphorus (P), reports of field and laboratory studies have noted that P. parvum toxi ...[more]

PMID: 26157435

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Project description:Soil and microbial biomass carbon (C), nitrogen (N), and phosphorus (P) play an important role in soil nutrient dynamics in biogeochemical cycles of terrestrial ecosystems. However, increased human activities as a result of agricultural intensification on soil nutrients and microbial C:N:P stoichiometry are poorly understood in this fragile forest-savanna transition agroecosystem. This study aimed to (i) assess soil and microbial C, N, and P stoichiometry in different land use systems, and (ii) examine the effect of soil and microbial C, N, and P stoichiometry on soils susceptible to human-induced land use changes. A total of 82 composite soil samples at a depth of 0–20 cm were sampled from forest, savanna, grassland, fallow and cropland for laboratory analysis. The results revealed that the concentrations of C, N, and P were low in Fallow and Cropland compared to other land use systems. Analysis of variance in microbial C, N, and P stoichiometric ratios revealed a significant decreasing tendency compared to soil C:N, C:P and N:P ratios with no statistical significance (p < 0.05). The C:P and N:P ratios were low compared to the C:N ratio in land uses. A significant positive correlation was observed between MBC and MBN (0.95; p < 0.01), and with C and N (0.69; p < 0.01). There were significant interactive effects of land use on soil and microbial variables. The estimated microbial C:N:P stoichiometric ratios (21:2:1) were well constrained in the study area. The transition from Forest to Cropland resulted in 64%, 52%, and 71% reduction in C, N, and P, respectively. This implies that phosphorus is the main factor limiting productivity. The low availability of phosphorus in these tropical soils may have resulted in low C:P and N:P ratios. Therefore, we conclude that our results highlight the importance of phosphorus limitation on ratios of microbial C:P and N:P in landuse systems. Nutrient inputs such as fertilizers, manure and crop residues should be applied to croplands to improve soil and microbial C, N and P levels. Further, effects of land use on soil nutrient status and stoichiometry at 1-meter depth will be considered in our future work.

Dataset Information

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.

Publications

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.

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