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Genetic Architecture of Transcription and Chromatin Regulation.


ABSTRACT: DNA microarray and next-generation sequencing provide data that can be used for the genetic analysis of multiple quantitative traits such as gene expression levels, transcription factor binding profiles, and epigenetic signatures. In particular, chromatin opening is tightly coupled with gene transcription. To understand how these two processes are genetically regulated and associated with each other, we examined the changes of chromatin accessibility and gene expression in response to genetic variation by means of quantitative trait loci mapping. Regulatory patterns commonly observed in yeast and human across different technical platforms and experimental designs suggest a higher genetic complexity of transcription regulation in contrast to a more robust genetic architecture of chromatin regulation.

SUBMITTER: Kim K 

PROVIDER: S-EPMC4500797 | biostudies-literature | 2015 Jun

REPOSITORIES: biostudies-literature

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Genetic Architecture of Transcription and Chromatin Regulation.

Kim Kwoneel K   Bang Hyoeun H   Lee Kibaick K   Choi Jung Kyoon JK  

Genomics & informatics 20150630 2


DNA microarray and next-generation sequencing provide data that can be used for the genetic analysis of multiple quantitative traits such as gene expression levels, transcription factor binding profiles, and epigenetic signatures. In particular, chromatin opening is tightly coupled with gene transcription. To understand how these two processes are genetically regulated and associated with each other, we examined the changes of chromatin accessibility and gene expression in response to genetic va  ...[more]

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