AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.

ABSTRACT:

Unlabelled

As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA's improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants.

Availability and implementation

AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov.

Contact

[e-mail]

Supplementary information

Supplementary d

SUBMITTER: Vuong H 

PROVIDER: S-EPMC4528632 | biostudies-literature | 2015 Aug

REPOSITORIES: biostudies-literature