Dataset Information
AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.
Ontology highlight
ABSTRACT: Unlabelled
As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA's improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants.Availability and implementation
AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov.Contact
Hue.Vuong@fnlcr.nih.govSupplementary information
Supplementary data are available at Bioinformatics online.
SUBMITTER: Vuong H
PROVIDER: S-EPMC4528632 | biostudies-literature | 2015 Aug
REPOSITORIES: biostudies-literature
Publications
AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.
Bioinformatics (Oxford, England) 20150409 16
<h4>Unlabelled</h4>As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA's improved interface, users can better visua ...[more]