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Phylogenetic and 2D/3D Analysis of HCV 1a NS4A Gene/Protein in Pakistani Isolates.


ABSTRACT: BACKGROUND:The nonstructural protein NS4A of hepatitis C virus is composed of 54 amino acids. This small size protein has vital role in many cellular functions. The most important reported function is being a cofactor of viral enzymes serine protease and helicase. OBJECTIVES:The objective of this study was to analyze the phylogenetic variation, its impact in terms of translation and any functional change in protein structure at primary 2D/3D structure using computational tools from Pakistani patients isolates. MATERIALS AND METHODS:Patient sera infected with Hepatitis C virus, genotype 1A, were obtained from Molecular Diagnostics lab, CEMB, University of the Punjab Lahore by using BD Vacutainer collection tubes (Becton Dickenson). RESULTS:Phylogenetic analysis of the gene revealed that Pakistani 1a HCV strains are in the start of third cluster and there is a difference between inter Pakistani isolates at primary, secondary and tertiary levels. CONCLUSIONS:Mutations were present in the central domain of NS4A (amino acids 21 - 34).

SUBMITTER: Hussain A 

PROVIDER: S-EPMC4532788 | biostudies-literature | 2015 Jun

REPOSITORIES: biostudies-literature

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Phylogenetic and 2D/3D Analysis of HCV 1a NS4A Gene/Protein in Pakistani Isolates.

Hussain Abrar A   Idrees Muhammad M   Asif Muhammad M   Ali Liaqat L   Rasool Mahmood M  

Hepatitis monthly 20150623 6


<h4>Background</h4>The nonstructural protein NS4A of hepatitis C virus is composed of 54 amino acids. This small size protein has vital role in many cellular functions. The most important reported function is being a cofactor of viral enzymes serine protease and helicase.<h4>Objectives</h4>The objective of this study was to analyze the phylogenetic variation, its impact in terms of translation and any functional change in protein structure at primary 2D/3D structure using computational tools fro  ...[more]

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