Browse
Submit Data
Databases
API
Help

Dataset Information

27 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Whole-Genome Sequence and Annotation of the Entomopathogenic Bacterium Xenorhabdus khoisanae Strain MCB.

ABSTRACT: We report here the draft genome sequence of Xenorhabdus khoisanae strain MCB, a Gram-negative bacterium and symbiont of a Steinernema entomopathogenic nematode. The genome assembly consists of 266 contigs covering 4.68 Mb. Genome annotation revealed 3,869 protein-coding sequences, with a G+C content of 43.5%.

SUBMITTER: Naidoo S

PROVIDER: S-EPMC4541266 | biostudies-literature | 2015 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Whole-Genome Sequence and Annotation of the Entomopathogenic Bacterium Xenorhabdus khoisanae Strain MCB.

Naidoo Stephanie S Featherston Jonathan J Gray Vincent M VM

Genome announcements 20150806 4

We report here the draft genome sequence of Xenorhabdus khoisanae strain MCB, a Gram-negative bacterium and symbiont of a Steinernema entomopathogenic nematode. The genome assembly consists of 266 contigs covering 4.68 Mb. Genome annotation revealed 3,869 protein-coding sequences, with a G+C content of 43.5%. ...[more]

PMID: 26251496

Similar Datasets

Draft Whole-Genome Sequence and Annotation of Xenorhabdus griffiniae Strain BMMCB Associated with the South African Entomopathogenic Nematode Steinernema khoisanae Strain BMMCB.

Project description:Xenorhabdus griffiniae strain BMMCB (LDNM00000000) belongs to the family Enterobacteriaceae and was isolated from the South African entomopathogenic nematode Steinernema khoisanae strain BMMCB (GenBank accession no. KT027382). Here, we report the draft whole-genome sequence of X. griffinae strain BMMCB with a genome size of 4,183,779 bp and 44.7% G+C content. The NCBI Prokaryotic Automatic Annotation Pipeline (PGAAP) revealed 3,970 genes.

| S-EPMC4505129 | biostudies-literature

Draft Whole-Genome Sequence of Xenorhabdus sp. Strain GDc328, Isolated from the Indigenous South African Nematode Host Steinernema khoisanae.

Project description:Here, we describe the draft genome sequence of Xenorhabdus sp. GDc328, an endosymbiont of the native South African entomopathogenic nematode host, Steinernema khoisanae. The total genome size of the bacteria is 4.09 Mb. The genome comprises a total of 3,608 genes with a molecular G+C content of 44.64%.

| S-EPMC4616188 | biostudies-literature

Xenorhabdus khoisanae strain:MCB

Project description:Xenorhabdus khoisanae strain:MCB Genome sequencing and assembly

| PRJNA285285 | ENA

Draft Whole-Genome Sequence of Serratia marcescens Strain MCB, Associated with Oscheius sp. MCB (Nematoda: Rhabditidae) Isolated from South Africa.

Project description:Here we report on the draft genome sequence of Serratia marcescens strain MCB associated with Oscheius sp. MCB (Nematoda: Rhabditidae) isolated from South African soil. S. marcescens strain MCB has 5,304,212-bp genome size with 4,877 genes and a G+C content of 59.1%.

| S-EPMC4172271 | biostudies-literature

The OxyR regulon in the entomopathogenic bacterium Xenorhabdus

Project description:Xenorhabdus nematophila is a Gram-negative bacterium, mutually associated with the soil nematode Steinernema carpocapsae and this nematobacterial complex is parasitic for a broad spectrum of insects. The transcriptional regulator OxyR is widely conserved in bacteria, but the OxyR regulon can vary significantly between species. OxyR activates the transcription of a set of genes that influence cellular defense against oxidative stress. It is also involved in the virulence of several bacterial pathogens. The aim of this study was to identify the X. nematophila OxyR regulon and investigate its role in the bacterial life cycle. An oxyR-mutant was constructed in X. nematophila and phenotypically characterized in vitro and in vivo after reassociation with its nematode partner. OxyR plays a major role during the X. nematophila resistance to oxidative stress in vitro. Transcriptome analysis allowed the identification of 59 genes differentially regulated in the oxyR mutant compared to the parental strain. In vivo, the oxyR mutant was able to reassociate with the nematode as efficiently as the control strain. These nematobacterial complexes harboring the oxyR mutant symbiont were able to rapidly kill the insect larvae in less than 48h after infestation, suggesting that factors other than OxyR could also allow X. nematophila to cope with oxidative stress encountered during this phase of infection in insect. The significant increased number of offspring of the nematobacterial complex when reassociated with the X. nematophila oxyR mutant compared to the control strain, revealed a potential role of OxyR during this symbiotic stage of the bacterial life-cycle.

2024-07-24 | GSE244155 | GEO

Draft Genome Sequence of a Noncognate Bacterium, Achromobacter sp. Strain Bel, Associated with a Rhabditid Entomopathogenic Nematode.

Project description:Achromobacter sp. strain Bel is a noncognate bacterium associated with a rhabditid entomopathogenic nematode of the Oscheius genus. Its draft genome sequence is 6.62 Mb with a G+C content of 65.4%. The genome highlights important genes which could play a role in entomopathogenicity.

| S-EPMC7686425 | biostudies-literature

Draft Genome Sequence and Gene Annotation of the Entomopathogenic Fungus Verticillium hemipterigenum.

Project description:Verticillium hemipterigenum (anamorph Torrubiella hemipterigena) is an entomopathogenic fungus and produces a broad range of secondary metabolites. Here, we present the draft genome sequence of the fungus, including gene structure and functional annotation. Genes were predicted incorporating RNA-Seq data and functionally annotated to provide the basis for further genome studies.

| S-EPMC4319583 | biostudies-literature

Immunosuppressive Activities of Novel PLA2 Inhibitors from Xenorhabdus hominickii, an Entomopathogenic Bacterium.

Project description:Eicosanoids mediate both cellular and humoral immune responses in insects. Phospholipase A2 (PLA2) catalyzes the first committed step in eicosanoid biosynthesis. It is a common pathogenic target of two entomopathogenic bacteria, Xenorhabdus and Photorhabdus. The objective of this study was to identify novel PLA2 inhibitors from X. hominickii and determine their immunosuppressive activities. To identify novel PLA2 inhibitors, stepwise fractionation of X. hominickii culture broth and subsequent enzyme assays were performed. Eight purified fractions of bacterial metabolites were obtained. Gas chromatography and mass spectrometry (GC-MS) analysis predicted that the main components in these eight fractions were 2-cyanobenzoic acid, dibutylamine, 2-ethyl 1-hexanol, phthalimide (PM), dioctyl terephthalate, docosane, bis (2-ethylhexyl) phthalate, and 3-ethoxy-4-methoxyphenol (EMP). Their synthetic compounds inhibited the activity of PLA2 in hemocytes of a lepidopteran insect, Spodoptera exigua, in a dose-dependent manner. They also showed significant inhibitory activities against immune responses such as prophenoloxidase activation and hemocytic nodulation of S. exigua larvae, with PM and EMP exhibiting the most potent inhibitory activities. These immunosuppressive activities were specific through PLA2 inhibition because an addition of arachidonic acid, a catalytic product of PLA2, significantly rescued such suppressed immune responses. The two most potent compounds (PM and EMP) showed significant insecticidal activities after oral administration. When the compounds were mixed with Bacillus thuringiensis (Bt), they markedly increased Bt pathogenicity. This study identified eight PLA2 inhibitors from bacterial metabolites of X. hominickii and demonstrated their potential as novel insecticides.

| S-EPMC7469199 | biostudies-literature

The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T.

Project description:Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the previously documented Y. entomophaga Yen-TC gene cluster, the genome encodes a diverse array of toxins, including two type III secretion systems, and five rhs-associated gene clusters. As well as these multicomponent systems, several orthologs of known insect toxins, such as VIP2 toxin and the binary toxin PirAB, and distant orthologs of some mammalian toxins, including repeats-in-toxin, a cytolethal distending toxin, hemolysin-like genes and an adenylate cyclase were identified. The genome also contains a large number of hypothetical proteins and orthologs of known effector proteins, such as LopT, as well as genes encoding a wide range of proteolytic determinants, including metalloproteases and pathogen fitness determinants, such as genes involved in iron metabolism. The bioinformatic data derived from the current in silico analysis, along with previous information on the pathobiology of Y. entomophaga against its insect hosts, suggests that a number of these virulence systems are required for survival in the hemocoel and incapacitation of the insect host.

| S-EPMC4885058 | biostudies-literature

Xenorhabdus khoisanae

Project description:Xenorhabdus khoisanae overview

| PRJNA335478 | ENA