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Gene expression profiling in adipose tissue from growing broiler chickens.

ABSTRACT: In this study, total RNA was collected from abdominal adipose tissue samples obtained from ten broiler chickens at 3, 4, 5, and 6 weeks of age and prepared for gene microarray analysis with Affymetrix GeneChip Chicken Genome Arrays (Affymetrix) and quantitative real-time PCR analysis. Studies of global gene expression in chicken adipose tissue were initiated since such studies in many animal species show that adipose tissue expresses and secretes many factors that can influence growth and physiology. Microarray results indicated 333 differentially expressed adipose tissue genes between 3 and 6 wk, 265 differentially expressed genes between 4 and 6 wk and 42 differentially expressed genes between 3 and 4 wk. Enrichment scores of Gene Ontology Biological Process categories indicated strong age upregulation of genes involved in the immune system response. In addition to microarray analysis, quantitative real-time PCR analysis was used to confirm the influence of age on the expression of adipose tissue CC chemokine ligands (CCL), toll-like receptor (TLR)-2, lipopolysaccharide-induced TNF factor (LITAF), chemokine (C-C motif) receptor 8 (CCR8), and several other genes. Between 3 and 6 wk of age CCL5, CCL1, and CCR8 expression increased (P = 0.0001) with age. Furthermore, TLR2, CCL19, and LITAF expression increased between 4 and 6 wk of age (P = 0.001). This is the first demonstration of age related changes in CCL, LITAF, and TLR2 gene expression in chicken adipose tissue. Future studies are needed to elucidate the role of these adipose tissue genes in growth and the immune system.

SUBMITTER: Hausman GJ

PROVIDER: S-EPMC4550682 | biostudies-literature | 2014 Oct-Dec

REPOSITORIES: biostudies-literature

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Gene expression profiling in adipose tissue from growing broiler chickens.

Hausman Gary J GJ Barb C Rick CR Fairchild Brian D BD Gamble John J Lee-Rutherford Laura L

Adipocyte 20141001 4

In this study, total RNA was collected from abdominal adipose tissue samples obtained from ten broiler chickens at 3, 4, 5, and 6 weeks of age and prepared for gene microarray analysis with Affymetrix GeneChip Chicken Genome Arrays (Affymetrix) and quantitative real-time PCR analysis. Studies of global gene expression in chicken adipose tissue were initiated since such studies in many animal species show that adipose tissue expresses and secretes many factors that can influence growth and physio ...[more]

PMID: 26317054

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Project description:BackgroundExcessive accumulation of lipids in the adipose tissue is a major problem in the present-day broiler industry. However, few studies have analyzed the expression of adipose tissue genes that are involved in pathways and mechanisms leading to adiposity in chickens. Gene expression profiling of chicken adipose tissue could provide key information about the ontogenesis of fatness and clarify the molecular mechanisms underlying obesity. In this study, Chicken Genome Arrays were used to construct an adipose tissue gene expression profile of 7-week-old broilers, and to screen adipose tissue genes that are differentially expressed in lean and fat lines divergently selected over eight generations for high and low abdominal fat weight.ResultsThe gene expression profiles detected 13,234-16,858 probe sets in chicken adipose tissue at 7 weeks, and genes involved in lipid metabolism and immunity such as fatty acid binding protein (FABP), thyroid hormone-responsive protein (Spot14), lipoprotein lipase(LPL), insulin-like growth factor binding protein 7(IGFBP7) and major histocompatibility complex (MHC), were highly expressed. In contrast, some genes related to lipogenesis, such as leptin receptor, sterol regulatory element binding proteins1 (SREBP1), apolipoprotein B(ApoB) and insulin-like growth factor 2(IGF2), were not detected. Moreover, 230 genes that were differentially expressed between the two lines were screened out; these were mainly involved in lipid metabolism, signal transduction, energy metabolism, tumorigenesis and immunity. Subsequently, real-time RT-PCR was performed to validate fifteen differentially expressed genes screened out by the microarray approach and high consistency was observed between the two methods.ConclusionOur results establish the groundwork for further studies of the basic genetic control of growth and development of chicken adipose tissue, and will be beneficial in clarifying the molecular mechanism of obesity in chickens.

Project description:Chickens divergently selected for either high abdominal fat content (fat genotype) or low abdominal fat content (lean genotype) at SRA-INRA, France were used to profile abdominal adipose gene expression during juvenile development (1 to 11 weeks of age) and to identify differentially expressed genes associated with genotype and age. The fat line (FL) and lean line (LL) chickens are different in various phenotypic and metabolic measurements, including abdominal fatness, plasma glycemia and T3. The FL and LL chickens represent unique models for characterizing biomedical and agricultural traits. The Del-Mar 14K Chicken Integrated Systems microarrays were used for a transcriptional scan in abdominal adipose during juvenile development using a balanced block hybridization design. Fluorescence intensities were normalized within array (without background subtraction), and between array (aquantile method) in LIMMA package R [Smyth, G. K. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology, Vol. 3, No. 1, Article 3] producing M-values (log-2 expression ratios) and A-values (average log-2 expression values). Normalized values were analyzed using a two factor ANOVA model. A total of 3,669 unique differentially expressed functional genes were identified (FDR<0.05). Genes were determined to have a significant effect of age (3,222), genotype (344), or an age by genotype interaction (254). The differentially expressed genes include metabolic enzymes, acute phase proteins, growth factors, coagulation factors, immune factors and transcription factors involved in various pathways. Several of the functional genes are also identified as positional candidate genes within QTLs in an F2 population established from an intercross between the FL and LL lines. Keywords: Divergently selected chickens, fatness, transcriptional profiling, differentially expressed genes

Project description:Increasing environmental complexity, e.g., by providing environmental enrichment, has been suggested as a way to increase activity levels and improve leg health in broilers. The aim of this study was to investigate the effects of different types of environmental complexity on leg health and measures of welfare of fast-growing broilers housed according to conventional European legislation. A total of 58 pens with approximately 500 broilers each (Ross 308), corresponding to a stocking density of 40 kg/m2, were used. A total of 8 treatment groups, of which 5 were enrichment treatments (roughage, vertical panels, straw bales, and elevated platforms at 5 and 30 cm) and 3 were standard resources manipulations [increased distances between feed and water (7 m and 3.5 m), stocking density reduced to 34 kg/m2, and 1 control group (1.5 m distance between feed and water and no enrichment objects)] were randomly assigned to each pen. At 35 D of age, 60 birds from each pen were assessed for gait, footpad dermatitis, hock burns, plumage cleanliness, presence of scratches, and leg deformities. Birds housed with 30 cm elevated platforms had worse gait compared to those housed with straw bales and at the lower stocking density of 34 kg/m2 (P = 0.004 and P = 0.001). Broilers from the control group also had worse gait compared to those housed at 34 kg/m2 stocking density. In addition, birds housed with access to a 30 cm elevated platform had healthier footpads compared to birds housed with access to straw bales (P = 0.0001) and with increased distance between feed and water (P = 0.011). Furthermore, birds housed with straw bales had worse footpad condition compared to birds with access to a 5 cm elevated platform (P = 0.002). There were no observed treatment effects on scratches, plumage cleanliness, leg deformities and body weight (P > 0.05). Based on the welfare indicators used in the present study, decreased stocking density has the potential of improving animal welfare, whereas the effects of elevated platforms need to be further studied before a final conclusion can be drawn, as footpad health was positively affected, but walking ability was impaired.

Dataset Information

Gene expression profiling in adipose tissue from growing broiler chickens.

Publications

Gene expression profiling in adipose tissue from growing broiler chickens.

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