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Kinetic fingerprinting to identify and count single nucleic acids.


ABSTRACT: MicroRNAs (miRNAs) have emerged as promising diagnostic biomarkers. We introduce a kinetic fingerprinting approach called single-molecule recognition through equilibrium Poisson sampling (SiMREPS) for the amplification-free counting of single unlabeled miRNA molecules, which circumvents thermodynamic limits of specificity and virtually eliminates false positives. We demonstrate high-confidence, single-molecule detection of synthetic and endogenous miRNAs in both buffer and minimally treated biofluids, as well as >500-fold discrimination between single nucleotide polymorphisms.

SUBMITTER: Johnson-Buck A 

PROVIDER: S-EPMC4559481 | biostudies-literature | 2015 Jul

REPOSITORIES: biostudies-literature

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Kinetic fingerprinting to identify and count single nucleic acids.

Johnson-Buck Alexander A   Su Xin X   Giraldez Maria D MD   Zhao Meiping M   Tewari Muneesh M   Walter Nils G NG  

Nature biotechnology 20150622 7


MicroRNAs (miRNAs) have emerged as promising diagnostic biomarkers. We introduce a kinetic fingerprinting approach called single-molecule recognition through equilibrium Poisson sampling (SiMREPS) for the amplification-free counting of single unlabeled miRNA molecules, which circumvents thermodynamic limits of specificity and virtually eliminates false positives. We demonstrate high-confidence, single-molecule detection of synthetic and endogenous miRNAs in both buffer and minimally treated biof  ...[more]

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